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Information on SUBCLASS 6.28.1
Subclass Accession number: 3367
Subclass: 6.28.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 49.2 +/- 33.6
Average RMSD (Å) : 0.343 +/- 0.336

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXXXpXhhh
(φψ)-conformation: bbapaaaNaa
Pattern: [IKLV][d][mtv][fwy][e][HR][AE][FMY][FLY][LPV][dq][LY]
Conservation:-0.708-0.131-1.386-0.058-0.5291.982-0.0140.8420.825-0.938-0.9611.076
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b06_A_1651b06   A169180VDEFEHAYYLQYEE-SGGGTHHHHbxaxaaaNaaaa
1bsm_A_1551bsm   A160171LDMWEHAFYLQYEE-SGGGTHHHHbxaxaaaNaaaa
1coj_A_1571coj   A162173IDTYEHAYYVDYEE-SGGGTHHHHbxaxaaaaaaaa
1kkc_A_1681kkc   A173184VDMWEHAYYLQYEE-SGGGTHHHHbxaxaaaNaaaa
1kp8_A_2261kp8   A226237KISNIREMLPVLEE--GGGTHHHHxbaxaaaaaaaa
1my6_A_1551my6   A160171IDVWEHAYYLDYEE-SGGGTHHHHbxaxaaaaaaaa
1pl4_A_1531pl4   A158169IDVWEHAYFLQYEE-SGGGTHHHHbxapaaaNaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b06_A_1651b06   A     OF1FERROUS ION, 1 WATER COORDINATED D - 170
1b06_A_1651b06   A     OF1FERROUS ION, 1 WATER COORDINATED E - 171
1b06_A_1651b06   A     OF1FERROUS ION, 1 WATER COORDINATED F - 172
1b06_A_1651b06   A     OF1FERROUS ION, 1 WATER COORDINATED H - 174
1b06_A_1651b06   A     OF1FERROUS ION, 1 WATER COORDINATED A - 175
1bsm_A_1551bsm   A     FEFE (III) ION D - 161
1bsm_A_1551bsm   A     FEFE (III) ION W - 163
1bsm_A_1551bsm   A     FEFE (III) ION H - 165
1bsm_A_1551bsm   A     FEFE (III) ION A - 166
1coj_A_1571coj   A     FEFE (III) ION D - 163
1coj_A_1571coj   A     FEFE (III) ION Y - 165
1coj_A_1571coj   A     FEFE (III) ION H - 167
1coj_A_1571coj   A     FEFE (III) ION A - 168
1kkc_A_1681kkc   A     MNMANGANESE (II) ION D - 174
1kkc_A_1681kkc   A     MNMANGANESE (II) ION W - 176
1kkc_A_1681kkc   A     MNMANGANESE (II) ION H - 178
1kkc_A_1681kkc   A     MNMANGANESE (II) ION A - 179
1pl4_A_1531pl4   A     MNMANGANESE (II) ION D - 159
1pl4_A_1531pl4   A     MNMANGANESE (II) ION W - 161
1pl4_A_1531pl4   A     MNMANGANESE (II) ION H - 163
1pl4_A_1531pl4   A     MNMANGANESE (II) ION A - 164
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bsm_A_1551bsm   A FEAFERRIC IRON A HEXA COORDINATED SUBSTRATE BINDING SITE BLOCKED BY A SOLVENT MOLECULED - 161
1bsm_A_1551bsm   A FEAFERRIC IRON A HEXA COORDINATED SUBSTRATE BINDING SITE BLOCKED BY A SOLVENT MOLECULEH - 165

Clusters included in this Subclass
CLUSTER: EH.5.87