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Information on SUBCLASS 6.62.1
Subclass Accession number: 3402
Subclass: 6.62.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0008460 (>50 %)  GO:0016829 (>50 %)  GO:0016835 (>50 %)  GO:0016836 (>50 %)  
SCOP : 51734 (>75 %)  51735 (>75 %)  51751 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 45.8 +/- 12.4
Average RMSD (Å) : 0.400 +/- 0.173

Consensus geometry
d (Å): 19 delta (°): 0-45 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: VphAAppXXD
(φψ)-conformation: bbapbpabaa
Pattern: [AV][I][V][HN][AFY][A][A][EH][ST]x[NV][D][KNR][AS]x[ANS]
Conservation:-0.5860.7950.7950.933-0.8480.7950.7950.164-0.110-0.363-1.3202.202-0.457-0.241-1.630-0.926
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1kbz_A_571kbz   A5772VIVNAAAHTAVDKAESEEEE------HHHHHHbbbxaxbxaxaaaaaa
1oc2_A_781oc2   A7893AIVHYAAESHNDNSLNEEEE--S---HHHHHHbbbbaxbxabaaaaaa
1r6d_A_791r6d   A7994AIVHFAAESHVDRSIAEEEE--S---HHHHHHbbbbapbxabaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1oc2_A_781oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 81
1oc2_A_781oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 82
1oc2_A_781oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 83
1oc2_A_781oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 84
1oc2_A_781oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 85
1oc2_A_781oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE S - 86
1oc2_A_781oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 86
1oc2_A_781oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE H - 87
1oc2_A_781oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 87
1oc2_A_781oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE N - 88
1oc2_A_781oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE D - 89
1r6d_A_791r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 82
1r6d_A_791r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 83
1r6d_A_791r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 84
1r6d_A_791r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 85
1r6d_A_791r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 86
1r6d_A_791r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 87
1r6d_A_791r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE S - 87
1r6d_A_791r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 88
1r6d_A_791r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE H - 88
1r6d_A_791r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE V - 89
1r6d_A_791r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE D - 90
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oc2_A_781oc2   A AC1TDX BINDING SITE FOR CHAIN AS - 86
1oc2_A_781oc2   A AC1TDX BINDING SITE FOR CHAIN AH - 87
1oc2_A_781oc2   A AC1TDX BINDING SITE FOR CHAIN AN - 88

Clusters included in this Subclass
CLUSTER: EH.5.400