ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.3.1

Subclass Accession number: 3518
Subclass: 9.3.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 46.5 +/- 29.8
Average RMSD (Å) : 0.280 +/- 0.179

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 45-90

rho (°): 180-225

Consensus Sequence:	XXhpXphhXFDpp
(φψ)-conformation:	bpababaabpbaa

Pattern:	x	[PS]	[FLW]	[DT]	[AS]	[QT]	[PW]	[fgl]	[iktv]	[F]	[D]	[NST]	[QS]	[FVY]	[FY]	[IKLV]	[DE]
Conservation:	-1.193	0.201	-0.199	0.043	0.023	-0.185	-0.067	-1.669	-1.313	1.885	1.885	-0.252	-0.002	-0.143	1.238	-0.897	0.645

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aru_*_199	1aru	-	199	215	SPLDSTPQVFDTQFYIE	EESSS-TTS-STHHHHH	xxababaabxbaaaaaa
1iyn_A_193	1iyn	A	193	209	QSWTAQWLKFDNSYFKD	EESSTTTTS-STHHHHH	bxabaxaabxbaaaaaa
1llp_*_191	1llp	-	191	207	LPFDSTPGIFDSQFFVE	EESSS-TTS-SSHHHHH	xxababaabxbaaaaaa
1mn2_*_188	1mn2	-	188	204	APFDSTPFTFDTQVFLE	EESSS-TTS-SSHHHHH	xxababaabxbaaaaaa
1qpa_A_191	1qpa	A	191	207	LPFDSTPGQFDSQFFVE	EESSS-TTS-SSHHHHH	xxababaabxbaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aru_*_199	1aru	*	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 201
1aru_*_199	1aru	*	CACALCIUM ION	L - 201
1aru_*_199	1aru	*	CACALCIUM ION	D - 202
1aru_*_199	1aru	*	CACALCIUM ION	S - 203
1aru_*_199	1aru	*	CACALCIUM ION	T - 204
1aru_*_199	1aru	*	CACALCIUM ION	P - 205
1aru_*_199	1aru	*	CACALCIUM ION	Q - 206
1aru_*_199	1aru	*	CACALCIUM ION	V - 207
1aru_*_199	1aru	*	CACALCIUM ION	F - 208
1aru_*_199	1aru	*	CACALCIUM ION	D - 209
1aru_*_199	1aru	*	CACALCIUM ION	T - 210
1aru_*_199	1aru	*	CACALCIUM ION	Q - 211
1aru_*_199	1aru	*	CACALCIUM ION	F - 212
1iyn_A_193	1iyn	A	HEMPROTOPORPHYRIN IX CONTAINING FE	W - 195
1llp_*_191	1llp	*	MANALPHA-D-MANNOSE	L - 191
1llp_*_191	1llp	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 193
1llp_*_191	1llp	*	CACALCIUM ION	F - 193
1llp_*_191	1llp	*	CACALCIUM ION	D - 194
1llp_*_191	1llp	*	CACALCIUM ION	S - 195
1llp_*_191	1llp	*	CACALCIUM ION	T - 196
1llp_*_191	1llp	*	CACALCIUM ION	P - 197
1llp_*_191	1llp	*	CACALCIUM ION	G - 198
1llp_*_191	1llp	*	CACALCIUM ION	I - 199
1llp_*_191	1llp	*	CACALCIUM ION	F - 200
1llp_*_191	1llp	*	CACALCIUM ION	D - 201
1llp_*_191	1llp	*	CACALCIUM ION	S - 202
1llp_*_191	1llp	*	CACALCIUM ION	Q - 203
1llp_*_191	1llp	*	CACALCIUM ION	F - 204
1mn2_*_188	1mn2	*	CACALCIUM ION	F - 190
1mn2_*_188	1mn2	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 190
1mn2_*_188	1mn2	*	CACALCIUM ION	D - 191
1mn2_*_188	1mn2	*	CACALCIUM ION	S - 192
1mn2_*_188	1mn2	*	CACALCIUM ION	T - 193
1mn2_*_188	1mn2	*	CACALCIUM ION	P - 194
1mn2_*_188	1mn2	*	CACALCIUM ION	F - 195
1mn2_*_188	1mn2	*	CACALCIUM ION	F - 197
1mn2_*_188	1mn2	*	CACALCIUM ION	D - 198
1mn2_*_188	1mn2	*	CACALCIUM ION	T - 199
1mn2_*_188	1mn2	*	CACALCIUM ION	Q - 200
1mn2_*_188	1mn2	*	CACALCIUM ION	V - 201
1qpa_A_191	1qpa	A	CACALCIUM ION	Q - 199
1qpa_A_191	1qpa	A	HTRBETA-HYDROXYTRYPTOPHANE	F - 205
1qpa_A_191	1qpa	A	CACALCIUM ION	F - 205

Clusters included in this Subclass

CLUSTER: EH.9.11