ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.24.1

Subclass Accession number: 3540
Subclass: 9.24.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0005529 (>75 %) GO:0030246 (>75 %)
SCOP : 50933 (>75 %) 50934 (>75 %) 50935 (>75 %)

Number of loops: 3

Average sequence ID (%) : 55.6 +/- -1.2
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	pXXPPXpXpDNWh
(φψ)-conformation:	bbpwpabaappaa

Pattern:	[KQ]	[FL]	[Y]	[EK]	[AD]	x	[P]	[P]	x	[SY]	[ADN]	[QTY]	[D]	[N]	[W]	[IL]	[A]	[R]
Conservation:	-0.301	-0.408	1.051	-0.311	-0.872	-1.174	1.051	1.051	-1.174	-0.812	-0.982	-1.021	0.706	0.706	2.433	-0.318	0.015	0.361

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1tl2_A_108	1tl2	A	108	125	KLYKASPPQSDTDNWIAR	EEEEES---STT--HHHH	bbbbbxwxabaaxxaaaa
1tl2_A_155	1tl2	A	155	172	QFYKALPPVSNQDNWLAR	EEEEE---SSTT--HHHH	xbbbbxwxabaaxxaaaa
1tl2_A_202	1tl2	A	202	219	KFYEDYPPSYAYDNWLAR	EEEEES---STT--HHHH	xbbbbpwxabaaxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 109
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 117
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 118
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 119
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 120
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 121
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 122
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 123
1tl2_A_108	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 124
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 156
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 162
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 164
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 165
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 166
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 167
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 168
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 169
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 170
1tl2_A_155	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 171
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 203
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 211
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 212
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 213
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 214
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 215
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 216
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 217
1tl2_A_202	1tl2	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 218

Clusters included in this Subclass

CLUSTER: EH.9.72