ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.3.3

Subclass Accession number: 355
Subclass: 5.3.3

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.7 (>75 %)  2.7.1 (>75 %)
GO : GO:0016301 (>75 %)  GO:0016772 (>75 %)  GO:0016773 (>75 %)
SCOP : 54210 (>75 %)  54211 (>75 %)  54232 (>75 %)

Number of loops: 5

Average sequence ID (%) : 17.5 +/- 16.8
Average RMSD (Å) : 1.000 +/- 0.255

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	phchphpXh
(φψ)-conformation:	aalbbpabb

Pattern:	x	[adnv]	x	[LV]	[DEK]	x	[AKL]	[GN]	[GIY]	[ehn]	[IPV]	[DEKW]	[AEGKT]	[FGW]	[FIV]	x
Conservation:	-0.178	-1.168	-1.093	1.732	0.951	-0.941	-0.062	1.920	-0.717	-0.360	0.493	-0.355	-0.790	0.822	0.764	-1.017

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gud_A_96	1gud	A	96	111	MDNLKKAGGNVEAFVT	HHHHHHTT---SEEEE	aaaaaaavbbbabbbb
1ihu_A_501	1ihu	A	511	526	QADLERAGIHPWGWII	HHHHHHTT----EEEE	aaaaaaavbbpabbbx
1jyh_A_22	1jyh	A	34	49	MMWVDSKNIVPKEWVA	HHHHHHTT---SEEEE	aaaaaaalxbxabbbb
1kkh_A_79	1kkh	A	86	101	KNTLDYLNIEPKTGFK	HHHHHHTT----S-EE	aaaaaaalbbwabxbb
1pie_A_101	1pie	A	108	123	IVMLKGAGYEIDKGFE	HHHHHHTT----S-EE	aaaaaaavxbxabxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 501
1ihu_A_501	1ihu	A	MGMAGNESIUM ION	T - 502
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 502
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	P - 503
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 527
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 528
1ihu_A_501	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 529

Clusters included in this Subclass

CLUSTER: HE.7.10