ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.7.1

Subclass Accession number: 3556
Subclass: 10.7.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0008431 (>50 %) GO:0019842 (>50 %)
SCOP : 52086 (>50 %) 52087 (>50 %) 52088 (>50 %)

Number of loops: 3

Average sequence ID (%) : 36.7 +/- 40.6
Average RMSD (Å) : 0.900 +/- 0.346

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hXXXphXXchhThp
(φψ)-conformation:	bbaaabpaaabpaa

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-0.158	-1.143	0.039	-0.355	-1.340	-0.749	1.222	2.404	-1.143	0.039	-0.158	-0.355	0.039	2.010	-0.158	-0.355	1.025	-0.355	-0.946	0.434

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1krh_A_58	1krh	A	58	77	YDMPEDNYIEDALTPEEAQQ	EE--GGGS-TTT--HHHHHH	bbbpaaabbaaabxaaaaaa
1oiz_A_113	1oiz	A	115	134	LIYRIAHWDPKVFTAYDVFR	EEEEGGG--TTT--HHHHHH	bbbbaaabxaaabxaaaaaa
1r5l_A_113	1r5l	A	115	134	LIYRIAHWDPKVFTAYDVFR	EEEEGGG--TTTS-HHHHHH	bbbbaaabxaaabxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1krh_A_58	1krh	A	FESFE2/S2 (INORGANIC) CLUSTER	A - 69
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	L - 115
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	Y - 117
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	I - 119
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	W - 122
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	A - 129
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	V - 132
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	F - 133
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	S - 136
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	L - 137
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	T - 139
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	S - 140
1oiz_A_113	1oiz	A	TRTFRAGMENT OF TRITON X-100	I - 143
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	L - 115
1r5l_A_113	1r5l	A	MSESELENOMETHIONINE	I - 116
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	Y - 117
1r5l_A_113	1r5l	A	MSESELENOMETHIONINE	R - 118
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	I - 119
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	W - 122
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	T - 128
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	A - 129
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	Y - 130
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	V - 132
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	F - 133
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	S - 136
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	L - 137
1r5l_A_113	1r5l	A	VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	S - 140

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1oiz_A_113	1oiz	A	AC5TRT BINDING SITE FOR CHAIN A	L - 115
1oiz_A_113	1oiz	A	AC5TRT BINDING SITE FOR CHAIN A	Y - 117
1oiz_A_113	1oiz	A	AC5TRT BINDING SITE FOR CHAIN A	S - 136
1oiz_A_113	1oiz	A	AC5TRT BINDING SITE FOR CHAIN A	S - 140
1oiz_A_113	1oiz	A	AC5TRT BINDING SITE FOR CHAIN A	I - 143

Clusters included in this Subclass

CLUSTER: EH.11.57