Information on SUBCLASS 5.5.1 |
Subclass Accession number: 357
Subclass: 5.5.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0008168 (>75 %) GO:0008757 (>75 %) GO:0016741 (>75 %) SCOP : 53334 (>75 %) 53335 (>75 %) |
Number of loops: 10 Average sequence ID (%) : 18.0 +/- 16.7 Average RMSD (Å) : 0.710 +/- 0.208 Consensus geometry
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Consensus Sequence: | XXcLXcphX |
(φψ)-conformation: | aalaaaabb |
Pattern: | x | x | x | [AFILT] | x | [DHKNQRS] | x | [AFILV] | [AENRT] | x | x | [DEGKN] | [ALV] | x | [DEKN] | [krty] | [FILTV] | [fitvw] |
Conservation: | -0.708 | -0.468 | -1.122 | 0.013 | -0.663 | 0.377 | -0.884 | 1.156 | 0.121 | -1.204 | -0.731 | 0.642 | 1.898 | -0.596 | 2.167 | -0.050 | 0.817 | -0.765 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d1q_A_19 | 1d1q | A | 24 | 41 | EAIFKHEVEKANLENRFN | HHHHHHHHHHTT-GGGEE | aaaaaaaaaaalaaaaba |
1e79_A_210 | 1e79 | A | 213 | 230 | VAQLVKRLTDADAMKYTI | HHHHHHHHHHTT-GGGEE | aaaaaaaaaaavaaaabb |
1f3l_A_286 | 1f3l | A | 287 | 304 | LYQAMDIIRLNKLEDTIV | HHHHHHHHHHTT-TTTEE | aaaaaaaaaaavaaaabb |
1h1d_A_93 | 1h1d | A | 96 | 113 | AAITQQMLNFAGLQDKVT | HHHHHHHHHHHT-TTTEE | aaaaaaaaaaavaaaabb |
1m1h_A_23 | 1m1h | A | 27 | 44 | KENLLKVLELEGLKDLVD | HHHHHHHHHHTT-GGGEE | aaaaaaaaaaavaaaaba |
1nv8_A_154 | 1nv8 | A | 157 | 174 | VEIARKNAERHGVSDRFF | HHHHHHHHHHTT-TTSEE | aaaaaaaaaaavaaaabb |
1o54_A_135 | 1o54 | A | 138 | 155 | AKLAESNLTKWGLIERVT | HHHHHHHHHHTT-GGGEE | aaaaaaaaaaavaaaabb |
1qlt_A_148 | 1qlt | A | 148 | 165 | YHDLHNYLEANNLRDKLW | HHHHHHHHHHTTGGGTEE | aaaaaaaaaaavaaaabb |
1qzz_A_215 | 1qzz | A | 218 | 235 | AERARRRFADAGLADRVT | HHHHHHHHHHTT-TTTEE | aaaaaaaaaaavaaaabb |
1r9l_A_141 | 1r9l | A | 143 | 160 | EGAINHQLAAYELTNTVT | HHHHHHHHHHTT-TTTEE | aaaaaaaaaaalaaaabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d1q_A_19 | 1d1q | A | 4NP4-NITROPHENYL PHOSPHATE | R - 19 |
1d1q_A_19 | 1d1q | A | 4NP4-NITROPHENYL PHOSPHATE | S - 20 |
1d1q_A_19 | 1d1q | A | 4NP4-NITROPHENYL PHOSPHATE | P - 21 |
1d1q_A_19 | 1d1q | A | 4NP4-NITROPHENYL PHOSPHATE | F - 46 |
1f3l_A_286 | 1f3l | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | I - 286 |
1h1d_A_93 | 1h1d | A | SAMS-ADENOSYLMETHIONINE | Y - 95 |
1nv8_A_154 | 1nv8 | A | SAMS-ADENOSYLMETHIONINE | A - 156 |
1qlt_A_148 | 1qlt | A | FADFLAVIN-ADENINE DINUCLEOTIDE | Y - 148 |
1qzz_A_215 | 1qzz | A | SAMS-ADENOSYLMETHIONINE | P - 217 |
1qzz_A_215 | 1qzz | A | ACTACETATE ION | F - 225 |
1r9l_A_141 | 1r9l | A | BETTRIMETHYL GLYCINE | G - 141 |
1r9l_A_141 | 1r9l | A | BETTRIMETHYL GLYCINE | C - 142 |
1r9l_A_141 | 1r9l | A | BETTRIMETHYL GLYCINE | E - 143 |
1r9l_A_141 | 1r9l | A | UNXUNKNOWN ATOM OR ION | T - 160 |
Clusters included in this Subclass |
CLUSTER: HE.5.36 |
CLUSTER: HE.7.6 |