Logo
Information on SUBCLASS 5.6.1
Subclass Accession number: 360
Subclass: 5.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 12.6 +/- 13.3
Average RMSD (Å) : 1.030 +/- 0.323

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXGXXXpXX
(φψ)-conformation: aalbppabb
Pattern: xx[AILMVY]x[adnrs]xx[GR]x[adkqrt]x[dhknty]x[anpv]xx
Conservation:-0.434-0.0240.404-0.340-0.038-0.419-0.0903.467-0.408-0.354-0.6220.123-0.665-0.372-0.228-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bu6_O_3731bu6   O393408EAMQADSGIRLHALRVHHHHHHH----SEEEEaaaaaaavbbxabbxb
1bup_A_1161bup   A129144EIAEAYLGKTVTNAVVHHHHHHHTS---EEEEaaaaaaavbxbaxbbb
1gqv_A_231gqv   A2843QVINNYQRRCKNQNTFHHHHHHHTS--SEEEEaaaaaaavbxxabbbb
1k1x_A_951k1x   A106120KDYARKLGYDAKGVW.HHHHHHTT----EEE.aaaaaaavbxpabbx.
1l5x_A_701l5x   A7590YLATFGLGRKYDIVLSHHHHHHHTS--SEEEEaaaaaaavbxxabbbb
1lj8_A_2381lj8   A242257LQLHDEHGIDDAWPVVHHHHHHH----SS-EEaaaaaaavxbbabxbb
1qop_B_2071qop   B214229AQILDKEGRLPDAVIAHHHHHHHSS--SEEEEaaaaaaavbxxabbbb
1s7j_A_1271s7j   A127142PEYEAALGTKIYEAYLHHHHHHHTS--SEEEEaaaaaaavbxbabbbb
1v4v_A_451v4v   A4962RQALSLFGIQEDRN..HHHHHTTT---SEE..aaaaaaavbbxabb..
1v7c_A_1661v7c   A169184FEVVDELGDAPHYHALHHHHHHHSS--SEEEEaaaaaaavbxxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bup_A_1161bup   A     PIHYDROGENPHOSPHATE ION V - 146
1gqv_A_231gqv   A     ACTACETATE ION L - 44
1l5x_A_701l5x   A     MSESELENOMETHIONINE L - 76
1l5x_A_701l5x   A     GOLGLYCEROL L - 76
1l5x_A_701l5x   A     MSESELENOMETHIONINE A - 77
1l5x_A_701l5x   A     GOLGLYCEROL A - 77
1l5x_A_701l5x   A     GOLGLYCEROL T - 78
1l5x_A_701l5x   A     MSESELENOMETHIONINE F - 79
1l5x_A_701l5x   A     MSESELENOMETHIONINE G - 80
1l5x_A_701l5x   A     GOLGLYCEROL G - 80
1l5x_A_701l5x   A     GOLGLYCEROL L - 81
1l5x_A_701l5x   A     GOLGLYCEROL Y - 85
1l5x_A_701l5x   A     MSESELENOMETHIONINE D - 86
1l5x_A_701l5x   A     MSESELENOMETHIONINE I - 92
1lj8_A_2381lj8   A     MSESELENOMETHIONINE H - 240
1lj8_A_2381lj8   A     MSESELENOMETHIONINE H - 245
1lj8_A_2381lj8   A     MSESELENOMETHIONINE G - 249
1lj8_A_2381lj8   A     MSESELENOMETHIONINE I - 250
1lj8_A_2381lj8   A     MSESELENOMETHIONINE D - 251
1lj8_A_2381lj8   A     MSESELENOMETHIONINE D - 252
1lj8_A_2381lj8   A     MSESELENOMETHIONINE W - 254
1lj8_A_2381lj8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE W - 254
1lj8_A_2381lj8   A     MSESELENOMETHIONINE V - 257
1qop_B_2071qop   B     PLPPYRIDOXAL-5'-PHOSPHATE C - 230
1v4v_A_451v4v   A     MSESELENOMETHIONINE I - 57
1v4v_A_451v4v   A     MSESELENOMETHIONINE D - 60
1v4v_A_451v4v   A     MSESELENOMETHIONINE R - 61
1v7c_A_1661v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID P - 185
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AR - 36
1gqv_A_231gqv   A P1P1 CAYALYTIC SUBSITE FOR CHAIN AK - 38
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AN - 39
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AQ - 40
1qop_B_2071qop   B PLPPLP BINDING SITE FOR CHAIN BC - 230

Clusters included in this Subclass
CLUSTER: HE.4.62
CLUSTER: HE.5.84
CLUSTER: HE.6.115
CLUSTER: HE.6.51