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Information on SUBCLASS 5.8.3
Subclass Accession number: 365
Subclass: 5.8.3 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0046914 (>75 %)  
SCOP : 51734 (>75 %)  51735 (>75 %)  53719 (>50 %)  53720 (>50 %)  53721 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 11.8 +/- 18.1
Average RMSD (Å) : 0.500 +/- 0.173

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: hXXXpXpXh
(φψ)-conformation: aapaapabb
Pattern: [AGV]x[AY]xx[AMV]x[HW][AEP][DNR][ITV][DKR][EFK][IV][AGN][CF][GT]
Conservation:-0.8460.901-0.083-0.846-0.962-0.264-1.1952.163-0.613-0.0320.201-0.148-1.0781.944-0.3811.0400.200
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1o04_A_2281o04   A228244AGAAIASHEDVDKVAFTHHHHHHT-TT--EEEEEaaaaaaaxaaxabbbbb
1qnx_A_1511qnx   A155171GHYTQMVWANTKEVGCGHHHHHHT-TT--EEEEEaaaaaaaxaaxabbbbb
1uzb_A_2421uzb   A243259VGAYLVEHPRIRFINFTHHHHHHT-TT--EEEEEaaaaaaaxaaxabbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 228
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 229
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 230
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 231
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 233
1o04_A_2281o04   A     GAIGUANIDINE D - 239
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 243
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 244

Clusters included in this Subclass
CLUSTER: HE.7.66