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Information on SUBCLASS 1.2.1
Subclass Accession number: 3653
Subclass: 1.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 55

Average sequence ID (%) : 11.5 +/- 15.9
Average RMSD (Å) : 0.444 +/- 0.191

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XhpXh
(φψ)-conformation: bbabb
Pattern: xxx[acfglmvwy][adeknqst]x[afgiltv][afgilptv]
Conservation:-0.798-0.464-0.666-0.6121.476-0.8731.4760.460
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bg2_*_441bg2   -4552PYAFDRVFEEE-SEEExbxbabbx
1chu_A_1911chu   A194201TCHAKAVVEEE-SEEExbbbabbb
1chu_A_71chu   A713.HSCDVLI.EE-SEEE.bbbabxb
1d4d_A_1241d4d   A124130.ETTDVVI.EE-SEEE.bbbabxb
1d5t_A_2731d5t   A274281VARCKQLIEEE-SEEEbbxbabbb
1d7y_A_2251d7y   A225232RIAADMVVEEE-SEEEbbxbabbb
1dkr_A_2181dkr   A220226ILIDDII.EEE-SEE.bxbbabb.
1e4e_A_851e4e   A8895INHVDVAFEEE-SEEExbxbabbb
1efu_B_1301efu   B136143ALEGDVLGEEE-SEEEbbbbabbb
1exm_A_2751exm   A275281.KTLQEGI.EE-SEEE.bxbabbb
1f83_A_1501f83   A152159GIFANLIIEEE-SEEExbxbabbb
1fl2_A_4371fl2   A439446NIELAGIFEEE-SEEEbbxbabbx
1g0u_A_1571g0u   A157164YFPWKATAEEE-SEEEbbxbabbb
1g0u_B_1571g0u   B157164YTGWKAISEEE-SEEEbbbbabbb
1g0u_C_1571g0u   C157164YSSWSAQTEEE-SEEEbbbbabbb
1g0u_G_1561g0u   G157164YVGYKATAEEE-SEEEbbxbabbb
1g0u_H_1181g0u   H119126TDVGYYLSEEE-SEEEbbbbabbb
1goj_A_471goj   A4855SFTFDRVFEEE-SEEEbbbbabbb
1hyu_A_4371hyu   A439446SVALAGIFEEE-SEEEbbxbabbb
1i6i_A_481i6i   A4956SFSFDYSYEEE-SEEEbbbbabbx
1i7p_A_1671i7p   A168175VRTVKSVGEEE-SEEExbbbabbx
1inl_A_291inl   A3138FMKMNRVIEEE-SEEEbbxbabba
1jlr_A_1901jlr   A191197IFVNILA.EEE-SEE.bxxbabb.
1jnr_A_181jnr   A2027VVETDILIEEE-SEEExbxbabbb
1jnr_A_2021jnr   A204211VFKAKAVIEEE-SEEEbbbbabbb
1jsd_A_2651jsd   A267274NCVVQCQTEEE-SEEExbbbabbb
1k0i_A_1461k0i   A149156RLDCDYIAEEE-SEEEbbxbabbb
1l0q_A_1911l0q   A195202TVKVEAAPEE--SSEEbxxbabxx
1lvl_*_1311lvl   -132139RIQCEHLLEEE-SEEExbbbabbb
1lvl_*_41lvl   -410.IQTTLLI.EE-SEEE.xbbabbb
1nhp_*_2321nhp   -232239AYDADLVVEEE-SEEEbbxbabbb
1nhp_*_991nhp   -101108VENYDKLIEEE-SEEEbbxbabbb
1o5o_A_1541o5o   A156162TLVALIA.EEE-SEE.bxbbabb.
1o94_A_6311o94   A632639WIEFDSLVEEE-SEEExbxbabbx
1ojj_A_1771ojj   A177182.FVTPFI..EE-SEE..xxbabb.
1q0b_A_611q0b   A6572TYTFDMVFEEE-SEEEbbbbabbb
1q1r_A_1001q1r   A100107ALDYDRLVEEE-SEEEbbxbabbb
1q9i_A_1251q9i   A125131.DTVDVVV.EE-SEEE.bbbabbb
1q9i_A_3001q9i   A303310WVKADAVIEEE-SEEEbbxbabbb
1qla_A_2041qla   A206213AYVAKGTLEEE-SEEEbbbbabbb
1qla_A_31qla   A310VQYCDSLVEEE-SEEEbbbbabxb
1rv0_H_2751rv0   H277283DCDTKCQ.EEE-SEE.abbbabb.
1rwr_A_2251rwr   A225231.MYGKHIT.EE-SEEE.bbbabbb
1ry6_A_441ry6   A5158EFIVDKVFEEE-SEEEbbbbabbb
1spp_A_111spp   A1219RLTDDYGTEEE-SEEExbbbabbb
1trb_*_2321trb   -233240SLDVAGLFEEE-SEEEbbxbabbb
1uir_A_161uir   A1825VRRMERVIEEE-SEEEbbxbabxa
1v04_A_2561v04   A261268VLSFDTLVEEE-SSEEbxbbabxx
1v8k_A_1161v8k   A122129AFCFDFAFEEE-SEEEbbbbabbb
1vdc_*_2311vdc   -233240DLKVSGLFEEE-SEEEbbxbabbb
2kin_A_472kin   A4753.YVFDRVL.EE-SEEE.bbbabbb
2mcm_*_622mcm   -6673LKVHSSFQEEE-SEEEbxbbabbx
2ncd_A_3952ncd   A395402IFSFDQVFEEE-SEEEbbbbabbb
2viu_A_2742viu   A276283TCISECITEEE-SEEExbbbabbb
3grs_*_193grs   -1925.ASYDYLV.EE-SEEE.xbbabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d4d_A_1241d4d   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 131
1e4e_A_851e4e   A     GOLGLYCEROL Y - 86
1e4e_A_851e4e   A     GOLGLYCEROL N - 89
1e4e_A_851e4e   A     GOLGLYCEROL H - 90
1i6i_A_481i6i   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL W - 57
1jnr_A_181jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 28
1jsd_A_2651jsd   A     NAGN-ACETYL-D-GLUCOSAMINE V - 269
1jsd_A_2651jsd   A     NAGN-ACETYL-D-GLUCOSAMINE V - 270
1jsd_A_2651jsd   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 271
1l0q_A_1911l0q   A     MSESELENOMETHIONINE V - 196
1l0q_A_1911l0q   A     MSESELENOMETHIONINE K - 197
1l0q_A_1911l0q   A     MSESELENOMETHIONINE V - 198
1l0q_A_1911l0q   A     MSESELENOMETHIONINE E - 199
1l0q_A_1911l0q   A     MSESELENOMETHIONINE A - 200
1l0q_A_1911l0q   A     MSESELENOMETHIONINE A - 201
1l0q_A_1911l0q   A     MSESELENOMETHIONINE P - 202
1lvl_*_41lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE I - 11
1ojj_A_1771ojj   A     GLCGLUCOSE F - 177
1ojj_A_1771ojj   A     GALD-GALACTOSE F - 177
1ojj_A_1771ojj   A     PCAPYROGLUTAMIC ACID F - 181
1q9i_A_1251q9i   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 132
1v04_A_2561v04   A     CACALCIUM ION D - 269
1v04_A_2561v04   A     PO4PHOSPHATE ION D - 269
1v04_A_2561v04   A     CACALCIUM ION N - 270
1v04_A_2561v04   A     PO4PHOSPHATE ION N - 270
1v04_A_2561v04   A     CACALCIUM ION I - 271
2mcm_*_622mcm   *     MPD2-METHYL-2,4-PENTANEDIOL Q - 65
2mcm_*_622mcm   *     MPD2-METHYL-2,4-PENTANEDIOL L - 66
2mcm_*_622mcm   *     MPD2-METHYL-2,4-PENTANEDIOL K - 67
2mcm_*_622mcm   *     MPD2-METHYL-2,4-PENTANEDIOL V - 68
2mcm_*_622mcm   *     MPD2-METHYL-2,4-PENTANEDIOL H - 69
3grs_*_193grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE I - 26
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1v04_A_2561v04   A AC2CA BINDING SITE FOR CHAIN AD - 269
1v04_A_2561v04   A AC2CA BINDING SITE FOR CHAIN AN - 270

Clusters included in this Subclass
CLUSTER: AR.1.10
CLUSTER: AR.1.57
CLUSTER: AR.2.5
CLUSTER: AR.3.11