Logo
Information on SUBCLASS 5.13.1
Subclass Accession number: 373
Subclass: 5.13.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 5.2 (>50 %)  5.2.1 (>50 %)  5.2.1.8
GO : GO:0003755 (>50 %)  GO:0005515 (>75 %)  GO:0005527 (>75 %)  GO:0005528 (>75 %)  GO:0008144 (>75 %)  GO:0016853 (>50 %)  GO:0016859 (>50 %)  
SCOP : 54533 (>50 %)  54534 (>50 %)  54535 (>50 %)  
Number of loops: 10

Average sequence ID (%) : 16.1 +/- 17.8
Average RMSD (Å) : 0.860 +/- 0.272

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XppXhXchX
(φψ)-conformation: aabpppgbb
Pattern: x[adknqr][ltvw]x[ehknqsy]x[DEHKPT][mpv]x[deg][fikltv]x[afglw]
Conservation:-0.836-0.5240.109-0.7560.0250.3170.2821.496-0.5092.424-0.095-0.887-1.046
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a5t_*_1221a5t   -129141LKTLEEPPAETWFHHHHTS--TTEEEaaaaabpxplbbb
1f60_B_11361f60   B11411153ANVKAIEMEGLTWHHHHT---TTEEEaaaaaxbbpvbbx
1gkz_A_1551gkz   A177188HLALHEDKPDFV.HHHTTS--TTEE.aaaaaxbbxvbb.
1jat_A_61jat   A1325EKLVSDPVPGITAHHHHHS--TTEEEaaaaabpxpvbbb
1lk9_A_1661lk9   A170182EQTKYFDKKGYVWHHHHHS--TTEEEaaaaaxxxxgbbx
1mv8_A_4041mv8   A404416VDLVNKTPSGKKLHHHHHS--TT-EEaaaaabxwxvbbb
1njf_A_1331njf   A140152LKTLEEPPEHVKFHHHHHS--TTEEEaaaaabppxvbbb
1nm2_A_1741nm2   A178190AALNEDKPEGVRKHHHHHS--TTEEEaaaaabxxpvxab
1u9a_A_11u9a   A1426KAWRKDHPFGFVAHHHHHS--TT-EEaaaaabbpxgxbb
2aak_*_42aak   -1426KRLQQDPPAGISGHHHHHS--TTEEEaaaaabxxpvbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gkz_A_1551gkz   A     XEXENON I - 170
1gkz_A_1551gkz   A     XEXENON R - 171
1gkz_A_1551gkz   A     XEXENON A - 174
1lk9_A_1661lk9   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID V - 167
1lk9_A_1661lk9   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 168
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE R - 169
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE E - 170
1lk9_A_1661lk9   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID E - 170
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE Q - 171
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE K - 173
1lk9_A_1661lk9   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 174
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE Y - 174
1njf_A_1331njf   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER A - 155

Clusters included in this Subclass
CLUSTER: HE.5.29
CLUSTER: HE.6.83