Information on SUBCLASS 5.13.1 |
Subclass Accession number: 373
Subclass: 5.13.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 5.2 (>50 %) 5.2.1 (>50 %) 5.2.1.8 GO : GO:0003755 (>50 %) GO:0005515 (>75 %) GO:0005527 (>75 %) GO:0005528 (>75 %) GO:0008144 (>75 %) GO:0016853 (>50 %) GO:0016859 (>50 %) SCOP : 54533 (>50 %) 54534 (>50 %) 54535 (>50 %) |
Number of loops: 10 Average sequence ID (%) : 16.1 +/- 17.8 Average RMSD (Å) : 0.860 +/- 0.272 Consensus geometry
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Consensus Sequence: | XppXhXchX |
(φψ)-conformation: | aabpppgbb |
Pattern: | x | [adknqr] | [ltvw] | x | [ehknqsy] | x | [DEHKPT] | [mpv] | x | [deg] | [fikltv] | x | [afglw] |
Conservation: | -0.836 | -0.524 | 0.109 | -0.756 | 0.025 | 0.317 | 0.282 | 1.496 | -0.509 | 2.424 | -0.095 | -0.887 | -1.046 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a5t_*_122 | 1a5t | - | 129 | 141 | LKTLEEPPAETWF | HHHHTS--TTEEE | aaaaabpxplbbb |
1f60_B_1136 | 1f60 | B | 1141 | 1153 | ANVKAIEMEGLTW | HHHHT---TTEEE | aaaaaxbbpvbbx |
1gkz_A_155 | 1gkz | A | 177 | 188 | HLALHEDKPDFV. | HHHTTS--TTEE. | aaaaaxbbxvbb. |
1jat_A_6 | 1jat | A | 13 | 25 | EKLVSDPVPGITA | HHHHHS--TTEEE | aaaaabpxpvbbb |
1lk9_A_166 | 1lk9 | A | 170 | 182 | EQTKYFDKKGYVW | HHHHHS--TTEEE | aaaaaxxxxgbbx |
1mv8_A_404 | 1mv8 | A | 404 | 416 | VDLVNKTPSGKKL | HHHHHS--TT-EE | aaaaabxwxvbbb |
1njf_A_133 | 1njf | A | 140 | 152 | LKTLEEPPEHVKF | HHHHHS--TTEEE | aaaaabppxvbbb |
1nm2_A_174 | 1nm2 | A | 178 | 190 | AALNEDKPEGVRK | HHHHHS--TTEEE | aaaaabxxpvxab |
1u9a_A_1 | 1u9a | A | 14 | 26 | KAWRKDHPFGFVA | HHHHHS--TT-EE | aaaaabbpxgxbb |
2aak_*_4 | 2aak | - | 14 | 26 | KRLQQDPPAGISG | HHHHHS--TTEEE | aaaaabxxpvbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gkz_A_155 | 1gkz | A | XEXENON | I - 170 |
1gkz_A_155 | 1gkz | A | XEXENON | R - 171 |
1gkz_A_155 | 1gkz | A | XEXENON | A - 174 |
1lk9_A_166 | 1lk9 | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | V - 167 |
1lk9_A_166 | 1lk9 | A | PLPPYRIDOXAL-5'-PHOSPHATE | F - 168 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | R - 169 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | E - 170 |
1lk9_A_166 | 1lk9 | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | E - 170 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | Q - 171 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | K - 173 |
1lk9_A_166 | 1lk9 | A | NAGN-ACETYL-D-GLUCOSAMINE | Y - 174 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | Y - 174 |
1njf_A_133 | 1njf | A | ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | A - 155 |
Clusters included in this Subclass |
CLUSTER: HE.5.29 |
CLUSTER: HE.6.83 |