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PDB code:

Information on SUBCLASS 3.2.5

Subclass Accession number: 3770 Subclass: 3.2.5 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 20 Average sequence ID (%) : 8.5 +/- 12.7 Average RMSD (Å) : 0.575 +/- 0.116 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dyp_A_67	1dyp	A	67	75	WSWKNENAT	EEE-GGGEE	bbxbaaabb
1fit_*_8	1fit	-	8	16	HLIKPSVVF	EEE-GGGEE	bxbxaaaxa
1fjr_A_29	1fjr	A	29	37	LLVPAILTG	EEE-GGGEE	bxbxaaabb
1flj_A_32	1flj	A	32	39	.ELHTKDIR	.EE-GGGEE	.xxbaaabb
1g29_1_284	1g29	1	287	295	FGIRPEDLY	EEE-GGGEE	bbbxaaabb
1gsa_*_34	1gsa	-	36	44	HYMEMGDLY	EEE-GGGEE	bxbbaaaxb
1gtt_A_249	1gtt	A	250	258	FLKAPNTLT	EEE-GGGEE	bbbxaaaxb
1izn_B_57	1izn	B	59	67	YLLCDYNRD	EEE-GGGEE	bbbbaaabb
1jd0_A_32	1jd0	A	32	39	.DLHSDILQ	.EE-GGGEE	.xbbaaabb
1keq_A_32	1keq	A	32	39	.NIQWKDSV	.EE-GGGEE	.xxbaaaxb
1mve_A_210	1mve	A	210	218	VDLTDKNIY	EEE-GGGEE	bxxbaaabb
1nni_1_134	1nni	1	134	142	LVLDPVHID	EEE-GGGEE	bbbxaaabx
1ntv_A_104	1ntv	A	106	114	HHHAVHEIS	EEE-GGGEE	bbbxaaaxa
1o4y_A_79	1o4y	A	79	87	TIFNAPQAW	EEE-GGGEE	xbpbaaabb
1o4z_A_115	1o4z	A	115	123	TEWKRDRSY	EEE-GGGEE	xbxbaaabb
1oxx_K_271	1oxx	K	274	282	IGIRPEDVK	EEE-GGGEE	bbbxaaabb
1p3r_A_112	1p3r	A	114	122	HEHPVNKIS	EEE-GGGEE	bbbxaaaxa
1p42_A_44	1p42	A	46	54	IPARHEFVV	EESSGGGEE	bxxbaaaxa
1pfv_A_134	1pfv	A	134	142	MFLPDRFVK	EE--GGGEE	bxbxaaabb
2ayh_*_33	2ayh	-	33	40	.TWRANNVN	.EE-GGGEE	.bxbaaabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dyp_A_67	1dyp	A	CDCADMIUM ION	E - 72
1fit_*_8	1fit	*	MSESELENOMETHIONINE	S - 13
1fit_*_8	1fit	*	MSESELENOMETHIONINE	V - 14
1fjr_A_29	1fjr	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 30
1fjr_A_29	1fjr	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 32
1fjr_A_29	1fjr	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 33
1g29_1_284	1g29	1	MGMAGNESIUM ION	R - 290
1g29_1_284	1g29	1	MGMAGNESIUM ION	E - 292
1g29_1_284	1g29	1	MGMAGNESIUM ION	D - 293
1gtt_A_249	1gtt	A	CACALCIUM ION	F - 250
1mve_A_210	1mve	A	MSESELENOMETHIONINE	D - 211
1mve_A_210	1mve	A	MSESELENOMETHIONINE	L - 212
1mve_A_210	1mve	A	MSESELENOMETHIONINE	T - 213
1mve_A_210	1mve	A	MSESELENOMETHIONINE	Y - 218
1nni_1_134	1nni	1	FMNFLAVIN MONONUCLEOTIDE	P - 138
1o4z_A_115	1o4z	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	W - 117
1oxx_K_271	1oxx	K	IODIODIDE ION	R - 271
1oxx_K_271	1oxx	K	IODIODIDE ION	I - 273

Clusters included in this Subclass

CLUSTER: AR.3.63

CLUSTER: AR.4.148

CLUSTER: AR.4.65

CLUSTER: AR.5.126

CLUSTER: AR.5.40

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