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Information on SUBCLASS 3.6.12
Subclass Accession number: 3813
Subclass: 3.6.12 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 56398 (>50 %)  56399 (>50 %)  56400 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 22.2 +/- 16.4
Average RMSD (Å) : 0.900 +/- 0.400

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: hLXRcXX
(φψ)-conformation: bbpplpb
Pattern: [EKY][LV][ILV][L]x[R][GN][GIT]x[LY][AES][IPV]x[DSW][NV]
Conservation:-0.4320.5060.5401.438-0.5822.1110.941-1.180-1.4790.708-0.282-0.432-0.582-0.731-0.545
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j7n_A_5181j7n   A518532KLILQRNIGLEIKDVEEEE-SSEEEEEEEEbbbxxxvxbbbxabb
1od5_A_3681od5   A371385YVVLYRNGIYSPHWNEEEE-TT-EEEEEEEbbbbxpvxbxppbbx
1ojq_A_1801ojq   A180194EVLLPRGTEYAVGSVEEEE-TTEEEEEEEExbxbpxvxbbbxabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1od5_A_3681od5   A     MGMAGNESIUM ION Q - 370
1od5_A_3681od5   A     MGMAGNESIUM ION V - 372
1od5_A_3681od5   A     MGMAGNESIUM ION Y - 380
1od5_A_3681od5   A     MGMAGNESIUM ION H - 383
1od5_A_3681od5   A     MGMAGNESIUM ION N - 385
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od5_A_3681od5   A AC4MG BINDING SITE FOR CHAIN BH - 383

Clusters included in this Subclass
CLUSTER: AR.3.233