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Information on SUBCLASS 3.7.1
Subclass Accession number: 3815
Subclass: 3.7.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 43

Average sequence ID (%) : 6.0 +/- 10.1
Average RMSD (Å) : 0.733 +/- 0.216

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXXXXXX
(φψ)-conformation: bbappbb
Pattern: xxxxxxxxxxx
Conservation:-1.0001.592-1.279-0.8730.793-0.2330.7830.092-0.875-1.000-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a26_*_9671a26   -967976VEVPLGNGIS.EEE----EEE.bxbxaxxpbx.
1cgt_*_801cgt   -8089VENIFATINY.EEE--S-EEE.xxbpapxbbb.
1d8c_A_3261d8c   A327337ISLHGRSLLFIEEE--S-EEEEbbbpabxxxbb
1dlc_*_6051dlc   -606614LASFSTPFE..EEE-SS-EE..bbxxaxwbb..
1dun_*_341dun   -3644IIPTDVKIQ..EEE---EEE..bxxbaxbbb..
1e4i_A_2901e4i   A292302GINYYSMSVNREEE----EEEExbbbabbbbbb
1eaf_*_4951eaf   -495505LIRKKYVHIGFEEE-SS--EEEbbxxabbbbxb
1eaq_A_1581eaq   A159169VATYHRAIKITEEE-SS-BEEEbbbxabxbxbb
1ej8_A_1491ej8   A150159WHKFDEPIEC.EEE--S-EEE.abbxaxxbxb.
1f7d_A_181f7d   A1928DLLAAKEIHL.EEE-SS-EEE.xbbxabxbbb.
1ga6_A_1291ga6   A129137VINVSLGWC..EEEE---EE..bbxbabbbp..
1gnx_A_3041gnx   A305314GVNYYSPTLV.EEE-S--EEE.xbbbabxbbb.
1gpl_*_4291gpl   -431439NFCSPETVR..EEE-S--EE..xbbbaxbbx..
1hyo_A_2571hyo   A257265TTISPWVVP..EEE-S-BEE..bbbxaxxxx..
1i52_A_1311i52   A134144AAPVRDTMKRAEEE--S-EEEEbbxxaxxbbbx
1ikn_A_1101ikn   A110120IHSFQNLGIQCEEE-S--EEEEbbbbabbbxxx
1j18_A_4921j18   A493502KSWQTIQQSW.EEE-SS-EEE.abbxaxxxbb.
1j6u_A_2521j6u   A252259..KRYLELKL...EE----EE...bpabbxbb.
1ji6_A_6101ji6   A611619LATTNSNMG..EEE-S--EE..bbbbabbbb..
1jj2_J_871jj2   J8797RVKFEDNAAVIEE--SS-EEEEbbbbabbbbbx
1kcl_A_801kcl   A8088VENIYSIIN..EEE----EE..xxbxaxbxb..
1lts_A_1341lts   A134141.VIDERLHR...EE----EE...bxxaxxxx..
1m44_A_1321m44   A132141.LPWHGPTSVL.EE--S-EEEE.bxxaxxxbbx
1mda_L_511mda   L5160.LVASGSWVGS.EE-S--EEEE.bxxaxbbxbx
1mo9_A_3081mo9   A308316.VFLGLGEQP..EEE----EE..bbxaxxxbp.
1mx1_A_10771mx1   A10771087VKNATSYPPMCEEE--S---EEbxxbabxwxxx
1nni_1_1281nni   1128136.NVIPKQLVL..EE-S--EEE..bxxapbbbb.
1nxj_A_201nxj   A2028.RSCDLQFRQ..EE-----EE..xbxaxxbbx.
1o63_A_1601o63   A162172ILDEIFVIRTHEEE----EEEExabxabxbbxb
1obd_A_301obd   A3341FVATDRISA..EEE-S--EE..bbxxaxbbb..
1obf_O_541obf   O5463.GKFPGTVSVN.EE-SS-EEEE.expaxbbbbb
1oga_E_1701oga   E170178VSTDPQPLK..EEE-SS-EE..bbbpabxbx..
1p42_A_1301p42   A130139.FVVEEPIIVE.EE--S-EEEE.xbxabwbbbb
1pam_A_801pam   A8089VENIYSVINY.EEE----EEE.xpbxapxbxb.
1pbg_A_2931pbg   A295305GINYYMSDWMQEEE-S--EEEEbbbbabbbbbb
1q5h_A_241q5h   A2635DLYSAYDYTI.EEE-SS-EEE.xbbxabxbbb.
1r4x_A_6311r4x   A631638.KSSPEPVA...EE-SS-EE...bbxabxbx..
1s18_A_731s18   A7585VEWDKDHGVLEEEE-SS-EEEEbbbpabbbxbb
1s5d_A_1341s5d   A134141.VLDEQLHR...EE-S--EE...xxxaxxxx..
1six_A_271six   A2837DLYSAEDVEL.EEE-SS-EEE.xxxxabxbbb.
1uyr_A_18871uyr   A18921902IGVETRTVENLEEE--S-EEEEbbbxaxxxbxb
1whi_*_761whi   -7686YIRFDENACVIEE--SS-EEEEbbbbabbbbbx
3cla_*_823cla   -8393LIVWDSVDPQFEEEES--EEEExbbxabbbwbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d8c_A_3261d8c   A     MSESELENOMETHIONINE L - 335
1d8c_A_3261d8c   A     MSESELENOMETHIONINE I - 337
1d8c_A_3261d8c   A     MSESELENOMETHIONINE R - 338
1d8c_A_3261d8c   A     MGMAGNESIUM ION R - 338
1d8c_A_3261d8c   A     GLVGLYOXYLIC ACID R - 338
1e4i_A_2901e4i   A     G2F2-DEOXY-2FLUORO-GLUCOSE N - 294
1e4i_A_2901e4i   A     G2F2-DEOXY-2FLUORO-GLUCOSE Y - 296
1eaq_A_1581eaq   A     MSESELENOMETHIONINE V - 159
1ga6_A_1291ga6   A     ACTACETATE ION V - 132
1ga6_A_1291ga6   A     ACTACETATE ION S - 133
1ga6_A_1291ga6   A     ACTACETATE ION L - 134
1ga6_A_1291ga6   A     ACTACETATE ION G - 135
1ga6_A_1291ga6   A     ACTACETATE ION W - 136
1hyo_A_2571hyo   A     MGMAGNESIUM ION T - 257
1hyo_A_2571hyo   A     MGMAGNESIUM ION T - 258
1j18_A_4921j18   A     GLCGLUCOSE W - 495
1j18_A_4921j18   A     GLCGLUCOSE Q - 496
1j18_A_4921j18   A     GLCGLUCOSE T - 497
1j18_A_4921j18   A     GLCGLUCOSE Q - 499
1j6u_A_2521j6u   A     MSESELENOMETHIONINE R - 253
1j6u_A_2521j6u   A     MSESELENOMETHIONINE Y - 254
1j6u_A_2521j6u   A     MSESELENOMETHIONINE L - 255
1j6u_A_2521j6u   A     MSESELENOMETHIONINE E - 256
1j6u_A_2521j6u   A     MSESELENOMETHIONINE L - 257
1j6u_A_2521j6u   A     MSESELENOMETHIONINE L - 259
1mo9_A_3081mo9   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 309
1mo9_A_3081mo9   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 314
1mx1_A_10771mx1   A     SIAO-SIALIC ACID K - 1078
1mx1_A_10771mx1   A     NAGN-ACETYL-D-GLUCOSAMINE N - 1079
1mx1_A_10771mx1   A     SIAO-SIALIC ACID N - 1079
1mx1_A_10771mx1   A     SIAO-SIALIC ACID A - 1080
1mx1_A_10771mx1   A     NAGN-ACETYL-D-GLUCOSAMINE T - 1081
1mx1_A_10771mx1   A     SIAO-SIALIC ACID T - 1081
1mx1_A_10771mx1   A     NAGN-ACETYL-D-GLUCOSAMINE S - 1082
1mx1_A_10771mx1   A     SIAO-SIALIC ACID S - 1082
1mx1_A_10771mx1   A     SIAO-SIALIC ACID Y - 1083
1mx1_A_10771mx1   A     SIAO-SIALIC ACID P - 1084
1mx1_A_10771mx1   A     SIAO-SIALIC ACID P - 1085
1nni_1_1281nni   1     MSESELENOMETHIONINE N - 128
1nni_1_1281nni   1     MSESELENOMETHIONINE V - 129
1nxj_A_201nxj   A     GLVGLYOXYLIC ACID L - 24
1nxj_A_201nxj   A     GLVGLYOXYLIC ACID Q - 25
1nxj_A_201nxj   A     GLVGLYOXYLIC ACID F - 26
1nxj_A_201nxj   A     GLVGLYOXYLIC ACID R - 27
1nxj_A_201nxj   A     GLVGLYOXYLIC ACID Q - 28
1o63_A_1601o63   A     MSESELENOMETHIONINE D - 164
1o63_A_1601o63   A     MSESELENOMETHIONINE E - 165
1o63_A_1601o63   A     MSESELENOMETHIONINE I - 166
1o63_A_1601o63   A     MSESELENOMETHIONINE F - 167
1o63_A_1601o63   A     MSESELENOMETHIONINE V - 168
1o63_A_1601o63   A     MSESELENOMETHIONINE I - 169
1obd_A_301obd   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 31
1obd_A_301obd   A     ATPADENOSINE-5'-TRIPHOSPHATE F - 33
1q5h_A_241q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE D - 26
1s18_A_731s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE D - 78
1s18_A_731s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE L - 84
1six_A_271six   A     MGMAGNESIUM ION D - 28
1six_A_271six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE D - 28
3cla_*_823cla   *     COCOBALT (II) ION D - 87
3cla_*_823cla   *     CLMCHLORAMPHENICOL Q - 92
3cla_*_823cla   *     CLMCHLORAMPHENICOL T - 94
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1eaq_A_1581eaq   A CL1CHLORIDE BINDING SITE FOR CHAIN AT - 169
1obd_A_301obd   A AC2ATP BINDING SITE FOR CHAIN AL - 31
1obd_A_301obd   A AC2ATP BINDING SITE FOR CHAIN AF - 33
1whi_*_761whi   * R1THIS SITE, WHICH IS LOCATED NEAR THE N-TERMINUS AT THE BASE OF THE BETA BARREL, IS PROPOSED TO INTERACT WITH 23S RRNA. IT CONTAINS TYROSINE 32 WHICH FORMS A CROSS-LINK TO 23S RRNA.Y - 76
1whi_*_761whi   * R1THIS SITE, WHICH IS LOCATED NEAR THE N-TERMINUS AT THE BASE OF THE BETA BARREL, IS PROPOSED TO INTERACT WITH 23S RRNA. IT CONTAINS TYROSINE 32 WHICH FORMS A CROSS-LINK TO 23S RRNA.R - 78

Clusters included in this Subclass
CLUSTER: AR.3.105
CLUSTER: AR.3.36
CLUSTER: AR.4.16
CLUSTER: AR.4.160
CLUSTER: AR.5.33
CLUSTER: AR.5.35
CLUSTER: AR.5.99
CLUSTER: AR.6.219