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PDB code:

Information on SUBCLASS 3.10.2

Subclass Accession number: 3833 Subclass: 3.10.2 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 8 Average sequence ID (%) : 9.9 +/- 16.7 Average RMSD (Å) : 0.425 +/- 0.183 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dan_L_67	1dan	L	70	77	CFCLPAFE.	EE--TTEE.	bbxxaabb.
1dlc_*_503	1dlc	-	503	510	.MIDSKKIT	.EE-SSSEE	.xxxaabxb
1g1s_A_140	1g1s	A	142	149	CSCYPGFY.	EEE-TTEE.	bbxxaabb.
1gyv_A_746	1gyv	A	752	760	AAVPKTFQL	EE--TT-EE	bbbxaabbb
1ly2_A_26	1ly2	A	29	37	YSCSGTFRL	EEE-TTEEE	bbbxaabbx
1m2o_A_399	1m2o	A	406	414	VKTSKDLKV	EEE-TTEEE	bbbxaabbb
1na8_A_555	1na8	A	562	570	SAVPKVMKV	EE--TTSEE	bbbxaabbb
1o9w_A_103	1o9w	A	109	117	WCVGANTAS	EE--TT-EE	bbxxaabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dan_L_67	1dan	L	CACALCIUM ION	S - 67
1dan_L_67	1dan	L	GLCGLUCOSE	Y - 68
1dan_L_67	1dan	L	FUCFUCOSE	F - 71
1dan_L_67	1dan	L	FUCFUCOSE	C - 72
1dan_L_67	1dan	L	FUCFUCOSE	L - 73
1g1s_A_140	1g1s	A	MPD2-METHYL-2,4-PENTANEDIOL	Y - 140
1g1s_A_140	1g1s	A	MPD2-METHYL-2,4-PENTANEDIOL	T - 141
1g1s_A_140	1g1s	A	MPD2-METHYL-2,4-PENTANEDIOL	C - 142
1g1s_A_140	1g1s	A	MPD2-METHYL-2,4-PENTANEDIOL	Y - 149
1o9w_A_103	1o9w	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 106
1o9w_A_103	1o9w	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 109
1o9w_A_103	1o9w	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 117
1o9w_A_103	1o9w	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 118
1o9w_A_103	1o9w	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 119
1o9w_A_103	1o9w	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 120
1o9w_A_103	1o9w	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 121

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o9w_A_103	1o9w	A	AC1NAG BINDING SITE FOR CHAIN A	W - 109
1o9w_A_103	1o9w	A	AC1NAG BINDING SITE FOR CHAIN A	T - 118
1o9w_A_103	1o9w	A	AC1NAG BINDING SITE FOR CHAIN A	Q - 119
1o9w_A_103	1o9w	A	AC1NAG BINDING SITE FOR CHAIN A	G - 120

Clusters included in this Subclass

CLUSTER: AR.4.69

CLUSTER: AR.5.241

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