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Information on SUBCLASS 5.26.1
Subclass Accession number: 387
Subclass: 5.26.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.7 (>50 %)  2.7.3 (>50 %)  2.7.3.2
GO : GO:0004111 (>50 %)  GO:0005509 (>75 %)  GO:0016301 (>50 %)  GO:0016772 (>50 %)  GO:0016775 (>50 %)  
SCOP : 47472 (>75 %)  47473 (>75 %)  47478 (>50 %)  55930 (>50 %)  55931 (>50 %)  55935 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 28.8 +/- 20.1
Average RMSD (Å) : 0.467 +/- 0.058

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: hXpGcXpXh
(φψ)-conformation: aabepaabb
Pattern: [ILP][EGN]x[IL][IKV][ADG][IV][FY][EH][K][Y][AS][AGL]x[EK][G][DN]x[HN][AQT][LV][SY]
Conservation:-0.956-0.616-1.1830.203-0.843-0.7860.4451.0580.6421.1982.219-0.019-1.126-1.0130.2281.7090.495-1.2400.945-0.786-0.040-0.536
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ig5_A_31ig5   A324PEELKGIFEKYAAKEGDPNQLSHHHHHHHHHHHHTTSS-TT-EEaaaaaaaaaaaaaabexaabbx
1k8u_A_51k8u   A930IGLLVAIFHKYSGREGDKHTLSHHHHHHHHHHHHTSSS-TTEEEaaaaaaaaaaaaaabexaabbx
1mr8_A_41mr8   A930LNSIIDVYHKYSLIKGNFHAVYHHHHHHHHHHHHTSSSSTT-EEaaaaaaaaaaaaaabexaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ig5_A_31ig5   A     MGMAGNESIUM ION Q - 22
1k8u_A_51k8u   A     MSESELENOMETHIONINE L - 5
1k8u_A_51k8u   A     MSESELENOMETHIONINE D - 6
1k8u_A_51k8u   A     MSESELENOMETHIONINE Q - 7
1k8u_A_51k8u   A     MSESELENOMETHIONINE A - 8
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED Y - 19
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED S - 20
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED L - 21
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED I - 22
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED K - 23
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED G - 24
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED N - 25
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED F - 26
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED H - 27
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED A - 28
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED V - 29
1mr8_A_41mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED Y - 30
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1mr8_A_41mr8   A EF1CALCIUM BINDING SITE IN EF HANDS - 20
1mr8_A_41mr8   A EF1CALCIUM BINDING SITE IN EF HANDK - 23
1mr8_A_41mr8   A EF1CALCIUM BINDING SITE IN EF HANDN - 25
1mr8_A_41mr8   A EF1CALCIUM BINDING SITE IN EF HANDA - 28

Clusters included in this Subclass
CLUSTER: HE.7.36