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Information on SUBCLASS 4.2.1
Subclass Accession number: 3876
Subclass: 4.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 37

Average sequence ID (%) : 11.0 +/- 13.6
Average RMSD (Å) : 0.765 +/- 0.239

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XhXXcpXh
(φψ)-conformation: bbpplpbb
Pattern: xx[afilpvy]xx[dgkns][cdehknqsty]x[afgilvwy]xx
Conservation:-1.000-0.6490.583-0.717-0.2862.144-0.206-0.9940.125-1.000-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b7y_B_2711b7y   B275284RRAREGERLK.EE--TT-EEE.bxxxpvxbbx.
1bdo_*_1081bdo   -108117.KVNVGDTLCI.EE-TT-EEEE.xbbpvxxabb
1bdo_*_1451bdo   -145154.PVEFDEPLVV.EE-TT-EEEE.xbbxvxwabb
1brw_A_3871brw   A387396.RVQKGEALAT.EE-TT-EEEE.xbbpvxxabb
1dpj_A_2021dpj   A203213YAELESHGAAIEEE-SS-EEEEbbxbblxbbxx
1e0t_A_1501e0t   A150159GDLGENKGVN.EEE-SS-EEE.bxxxxvxxbb.
1fny_A_411fny   A4150.VPSSKSLGRA.EE-SS-EEEE.xxxxlbbbbb
1g24_A_1881g24   A192202FKVAKGSKAGYEEE-TT-B-EExxbxpvxxbbx
1g6g_A_1221g6g   A122132QLLSQGDEITVEE--TT-EEEEbxxbpvxbbbb
1g97_A_3691g97   A369377CEVGSNVNF..EEE-SS-EE..bbbxxlxbx..
1giq_A_3541giq   A358368INIPKDSPGAYEEE-TT-S-EEbxbxpvxxebx
1gpr_*_1051gpr   -105114.RVEPGQKLLE.EE-TT-EEEE.xbbpvxxabb
1gsm_A_1341gsm   A134141.QELEGAQA...EE-TT-EE...bxxxvxxx..
1hhs_A_4881hhs   A488496ISYEHGGAF..EEE-SS-EE..bbbxxvpbb..
1htp_*_491htp   -4958.SVTKGKGFGA.EE-BTSEEEE.xbbpvbxabb
1hv9_A_3771hv9   A377385.NIGAGTITC..EE-TT-EEE..bxpxvxbxx.
1hv9_A_4021hv9   A402410.FVGSDTQLV..EE-TT-EEE..bxxpvxbbx.
1iam_*_971iam   -97106.WQPVGKQLTL.EE-TTSEEEE.xbpxvbxbbx
1ibq_A_631ibq   A6372.TKLSGYSWDI.EE-TT-BEEE.bxxxvxbbbb
1j2z_A_1041j2z   A105113TLIGDKNLL..EEE-SS-EE..bbbFblbbb..
1j2z_A_1241j2z   A124131.VIGSHCIL...EE-SS-EE...bbFbvxbb..
1j2z_A_791j2z   A8088LIIGEDNLI..EEE-SS-EE..bbbxxlxbb..
1j3l_A_1351j3l   A135145VEVLPGSFLLAEEE-TT-EEEEbxbbxgxbbbb
1krr_A_1031krr   A103111.LIAPNVTLS..EE-SS-EEE..bbxxlbbbb.
1lk9_A_521lk9   A5260.EKIQGCSAD..EE-TT--EE..xxxxvbxxb.
1mr7_A_301mr7   A3039VEVGEYSYYD.EEE-TT-EEE.bbbxpvxbbb.
1mvq_A_1631mvq   A163172.SPQSDSVGRA.EE-SS-EEEE.bxbxlbbbbb
1ne6_A_3101ne6   A314322GRLGPSDYF..EEE-TT-EE..bbbbpvxbb..
1nsz_A_3211nsz   A321330.SLKAGEKYQA.EE-TT-EEEE.xbxpvxxxbb
1o75_A_3821o75   A388398ADFTPGTEYTVEEE-TT-EEEExbxxpgxxbbb
1o7f_A_1021o7f   A105113CTLGIGTAF..EEE-TT-EE..bbbbpvxbb..
1ojq_A_1521ojq   A156166LELPKGTKAAYEEE-TT-B-EEbxxxpvxxbbx
1qs1_A_4021qs1   A406416LQVPKGSTGAYEEE-TT-SEEEbxbxpvxxbbx
1ua4_A_1751ua4   A179187YEFPRGFRV..EEE-TT-EE..bxbxxvpbb..
1wbf_A_401wbf   A4049.VPTWNSTGRA.EE-SS-EEEE.bxbxlbbbbb
2f3g_A_1122f3g   A112121.RVKVGDTVIE.EE-TT-EEEE.xbbpvxpabb
2gpr_*_1472gpr   -147157GEVKQGDVVAIEEE-TT-EEEEexbbpgxxabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bdo_*_1081bdo   *     BTNBIOTIN I - 117
1bdo_*_1081bdo   *     BTNBIOTIN E - 119
1dpj_A_2021dpj   A     NAGN-ACETYL-D-GLUCOSAMINE E - 202
1dpj_A_2021dpj   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 203
1hhs_A_4881hhs   A     MNMANGANESE (II) ION E - 491
1hhs_A_4881hhs   A     MNMANGANESE (II) ION G - 494
1hhs_A_4881hhs   A     MNMANGANESE (II) ION A - 495
1hhs_A_4881hhs   A     MNMANGANESE (II) ION F - 496
1htp_*_491htp   *     OSS6-(HYDROXYETHYLDITHIO)-8-(AMINOMETHYLTHIO)OCTANOIC ACID V - 59
1htp_*_491htp   *     OSS6-(HYDROXYETHYLDITHIO)-8-(AMINOMETHYLTHIO)OCTANOIC ACID S - 61
1hv9_A_3771hv9   A     COCOBALT (II) ION N - 377
1hv9_A_3771hv9   A     COACOENZYME A N - 377
1hv9_A_3771hv9   A     COCOBALT (II) ION G - 379
1hv9_A_3771hv9   A     COACOENZYME A G - 379
1hv9_A_3771hv9   A     COCOBALT (II) ION A - 380
1hv9_A_3771hv9   A     COACOENZYME A A - 380
1hv9_A_3771hv9   A     COCOBALT (II) ION G - 381
1hv9_A_3771hv9   A     COCOBALT (II) ION I - 383
1hv9_A_4021hv9   A     COCOBALT (II) ION F - 402
1hv9_A_4021hv9   A     COACOENZYME A F - 402
1hv9_A_4021hv9   A     COCOBALT (II) ION V - 403
1hv9_A_4021hv9   A     COACOENZYME A V - 403
1hv9_A_4021hv9   A     COCOBALT (II) ION G - 404
1hv9_A_4021hv9   A     COACOENZYME A G - 404
1hv9_A_4021hv9   A     COCOBALT (II) ION S - 405
1hv9_A_4021hv9   A     COACOENZYME A S - 405
1hv9_A_4021hv9   A     COCOBALT (II) ION D - 406
1hv9_A_4021hv9   A     COCOBALT (II) ION Q - 408
1j3l_A_1351j3l   A     MSESELENOMETHIONINE A - 145
1j3l_A_1351j3l   A     MSESELENOMETHIONINE D - 146
1krr_A_1031krr   A     ACOACETYL COENZYME *A I - 104
1krr_A_1031krr   A     ACOACETYL COENZYME *A A - 105
1krr_A_1031krr   A     ACOACETYL COENZYME *A P - 106
1krr_A_1031krr   A     ACOACETYL COENZYME *A S - 111
1mvq_A_1631mvq   A     MMAO1-METHYL-MANNOSE D - 167
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL V - 313
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL G - 314
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL L - 316
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL Y - 321
1ne6_A_3101ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL F - 322
1ua4_A_1751ua4   A     GLCGLUCOSE H - 176
1ua4_A_1751ua4   A     GLCGLUCOSE I - 178
1wbf_A_401wbf   A     NAGN-ACETYL-D-GLUCOSAMINE W - 43
1wbf_A_401wbf   A     NAGN-ACETYL-D-GLUCOSAMINE N - 44
1wbf_A_401wbf   A     NAGN-ACETYL-D-GLUCOSAMINE S - 45
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hhs_A_4881hhs   A MN1MN BINDING SITE FOR CHAIN AE - 491
1hhs_A_4881hhs   A MN1MN BINDING SITE FOR CHAIN AA - 495

Clusters included in this Subclass
CLUSTER: AR.3.35
CLUSTER: AR.4.151
CLUSTER: AR.4.194
CLUSTER: AR.4.52
CLUSTER: AR.5.212
CLUSTER: AR.5.42
CLUSTER: AR.5.50
CLUSTER: AR.7.101