Information on SUBCLASS 4.2.3 |
Subclass Accession number: 3878
Subclass: 4.2.3 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 17.0 +/- 20.4 Average RMSD (Å) : 0.607 +/- 0.325 Consensus geometry
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Consensus Sequence: | XhXXcpXh |
(φψ)-conformation: | bbpplpbb |
Pattern: | [afiltv] | x | [cgilv] | [aekqst] | [hkpqs] | [dgks] | [aekqrs] | x | [hilvy] | x |
Conservation: | 0.379 | -1.223 | -0.745 | -0.093 | -0.279 | 1.918 | 0.981 | -0.029 | 0.456 | -1.367 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1acc_*_106 | 1acc | - | 106 | 115 | IRLEKGRLYQ | EEE-TT-EEE | bxbxxvbxbx |
1aoz_A_206 | 1aoz | A | 206 | 215 | FHVSPKKTYR | EEE-TT-EEE | xbbxplbbbx |
1c5d_B_11 | 1c5d | B | 11 | 19 | .LVQPSQTLS | .EE-TTS-EE | .bbxpgxbxb |
1e30_A_63 | 1e30 | A | 64 | 73 | LEIPAGATVD | EEE-TT-EEE | bbbxxvxxbx |
1gw0_A_216 | 1gw0 | A | 217 | 226 | VTLTPGKRHR | EEE-TT-EEE | bbxxpvbxbx |
1gyc_A_187 | 1gyc | A | 188 | 197 | INVQHGKRYR | EEE-TT-EEE | bxbbpvbbbx |
1hfu_A_186 | 1hfu | A | 187 | 196 | VNVEQGKKYR | EEE-TT-EEE | bxbbpvxbbx |
1kya_A_187 | 1kya | A | 188 | 197 | ISVTPGKRYR | EEE-TT-EEE | bxbbpvxbbx |
1lml_*_533 | 1lml | - | 533 | 542 | TNCTPGLRVE | EE--TT-EEE | bpbxpgxbbx |
1mda_H_57 | 1mda | H | 62 | 71 | SLGAFLSLAV | EEE-TT-EEE | bbbFxlxbxb |
1o54_A_23 | 1o54 | A | 26 | 35 | VDLEKDKKLH | EE--TT-EEE | bxxbpvxbbb |
1q8i_A_264 | 1q8i | A | 266 | 275 | FAQAKGRLII | EEEBTTBEEE | bxbbpvbxbb |
1qht_A_247 | 1qht | A | 249 | 258 | AVEVKGRIHF | EEE-TTSEEE | bbbbpvbbxx |
2plt_*_18 | 2plt | - | 19 | 28 | LTIKSGETVN | EEE-TT-EEE | bbbxpvxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gw0_A_216 | 1gw0 | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 216 |
1gw0_A_216 | 1gw0 | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 217 |
1gw0_A_216 | 1gw0 | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 218 |
1gw0_A_216 | 1gw0 | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 227 |
2plt_*_18 | 2plt | * | CACALCIUM ION | T - 18 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gw0_A_216 | 1gw0 | A | BC6NAG BINDING SITE FOR CHAIN A | N - 216 |
1gw0_A_216 | 1gw0 | A | BC6NAG BINDING SITE FOR CHAIN A | T - 218 |
1lml_*_533 | 1lml | * | CA3CARBOHYDRATE BINDING SITE. | N - 534 |
Clusters included in this Subclass |
CLUSTER: AR.5.24 |