Information on SUBCLASS 4.8.3 |
Subclass Accession number: 3910
Subclass: 4.8.3 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 38.3 +/- 24.2 Average RMSD (Å) : 0.380 +/- 0.084 Consensus geometry
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Consensus Sequence: | hhRGXchX |
(φψ)-conformation: | bbpaaapa |
Pattern: | [TV] | [akr] | [KQRS] | [ly] | [EG] | [EKQT] | [IMV] | [LVY] | [ILV] | [R] | [G] | [CDEN] | [KN] | [IV] | [lv] | [AFLY] | [IL] | [qs] |
Conservation: | 0.134 | -1.030 | -0.428 | -0.975 | 0.150 | -0.697 | 0.251 | -0.484 | 0.400 | 1.775 | 2.431 | -0.871 | 0.705 | 0.792 | -0.994 | -0.648 | 0.563 | -1.075 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d3b_A_55 | 1d3b | A | 55 | 72 | VAQLEQVYIRGCKIRFLI | EEEEEEEEE-GGGEEEEE | bbbbabbbbxaaaxabbb |
1h64_1_52 | 1h64 | 1 | 54 | 71 | VKRYGKIVIRGDNVLAIS | EEEEEEEEE-GGGEEEEE | abbbabbbbxaaaxabbb |
1i8f_A_59 | 1i8f | A | 60 | 77 | VYKRGTMVVRGENVLFIS | EEEEEEEEE-GGGEEEEE | xbxaexbbbxaaaxabbb |
1ljo_A_54 | 1ljo | A | 56 | 73 | VRSLGEIVLRGNNVVLIQ | EEEEEEEEE-GGGEEEEE | abxaexbbbxaaaxabbb |
1mgq_A_61 | 1mgq | A | 63 | 80 | TRRLGTVLIRGDNIVYIS | EEEEEEEEE-GGGEEEEE | abbaexbbbxaaaxabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d3b_A_55 | 1d3b | A | GOLGLYCEROL | V - 55 |
1d3b_A_55 | 1d3b | A | GOLGLYCEROL | I - 68 |
1d3b_A_55 | 1d3b | A | GOLGLYCEROL | R - 69 |
1d3b_A_55 | 1d3b | A | GOLGLYCEROL | I - 72 |
1i8f_A_59 | 1i8f | A | GOLGLYCEROL | Y - 61 |
1i8f_A_59 | 1i8f | A | GOLGLYCEROL | R - 63 |
Clusters included in this Subclass |
CLUSTER: AR.3.166 |
CLUSTER: AR.5.139 |