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Information on SUBCLASS 5.1.1
Subclass Accession number: 3987
Subclass: 5.1.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 59

Average sequence ID (%) : 13.3 +/- 15.6
Average RMSD (Å) : 0.625 +/- 0.357

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXXXpXXX
(φψ)-conformation: bbapabpbb
Pattern: [acfiklmtv]x[chnrsty]x[adegknst][dehknpqrst][cdehknqrstwy]xxx
Conservation:1.030-1.0801.894-0.8370.9200.206-0.630-0.434-0.067-1.002
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ahs_A_2311ahs   A233242VGNPGARRSIEEE-SSS-EEbbbaxabxbb
1aun_*_31aun   -615VHNNCPYTVWEEE-SSS-EEbbbaxaxxbx
1bag_*_3701bag   -373382LANAGSSSVSEEE-SSS-EEbbbaxabxbx
1bf2_*_6811bf2   -684693AYNGWSSSVTEEE-SSS-EEbbxaxabpbx
1du5_A_21du5   A514VVNQCPFTVWEEE-SSS-EEbbxaxabxbb
1dun_*_801dun   -8392CTNIGKSNIKEEE-SSS-EEbbbaxabpbb
1efv_A_1531efv   A157166VKCDEKVKVFEE---SSEEEbbbaxabxbb
1ejx_B_20211ejx   B20262035VENHGDRPIQEEE-SSS-EEbbxaxabxbb
1euw_A_961euw   A101110VWNRGQDSFTEEE-SSS-EEbbxababpbb
1ex0_A_5331ex0   A539548FRNNSHNRYTEEE-SSS-EEbbxaxabxbb
1f7d_A_791f7d   A8291MINVSRKSITEEE-SSS-EEbbxaxabpbb
1fi2_A_1371fi2   A139148QFNVGKTEAYEEE-SSS-EEbbxaxabxbb
1g5a_A_5751g5a   A578587FGNFSEYPQTEEE-SSS-EEbbxababxbb
1gef_A_421gef   A4857KVTKKDHLYVEEESSS-EEEbbbaxabbxb
1gjw_A_5931gjw   A598607AANVGKEPKEEEE-SSS-EEbbxaxabwbb
1iby_A_471iby   A5261VENKSPISEGEEE-SSS-EEbbxaxabpbb
1ifr_A_4511ifr   A454463LRNKSNEDQSEEE-SSS-EEbbxaxabxbx
1ig0_A_2951ig0   A296305CFIDTKDDIIEEEEESS-EEbbbbbabpbx
1ig3_A_2461ig3   A247256VTVETDHPLLEEEEESS-EEbbbbbabpbx
1j1l_A_2251j1l   A228237VENKDPKRSHEE--SSS-EEbbbabaxxxb
1j3q_A_1361j3q   A139148TINTGDKPFIEEE-SSS-EEbbbababpbb
1ji1_A_5781ji1   A582591VLNNDSVSHTEEE-SSS-EEbbbaxabxbx
1jsm_A_1601jsm   A164173YNNTNQEDLLEE--SSS-EEbxxaxaxxbx
1juh_A_1101juh   A114123FQIQDPDTEMEEE-STTEEEbbxaxabxbb
1juh_A_3091juh   A311320YYSEAYFSKVEEESSSSEEEbbxaxabbbb
1khu_A_2871khu   A287296FHASSTSVLVEE--SSEEEEbbxababbbb
1khu_A_3421khu   A345354AECLSDSSIFEEE-SSS-EEbbxaxaxxbb
1khx_A_3441khx   A347356AECLSDSAIFEEE-SSS-EEbbxaxabxbb
1kij_A_2501kij   A257266LHTQGYNAEIEEBSSS--EEbbbaxaxbbb
1l0q_A_3451l0q   A345353.SSKKQNPTH.EE-SSS-EE.bbaxabxbb
1l4i_A_1411l4i   A142151LFNPTPYYLTEE--SSS-EEbbbababxbb
1msp_A_291msp   A3342ITNAGGRRIGEEE-SSS-EEbbxababpbb
1mxg_A_3641mxg   A367376YINLSPNWVGEEE-SSS-EEbbbaxabxbb
1n7o_A_6771n7o   A684693IQNTSTDTAAEEE-SSS-EExbbaxaxxbb
1na8_A_5401na8   A547556MLSTAPQPIREEE--SS-EEbbbaxabxbb
1nbc_A_201nbc   A2433VTNTGSSAIDEEE-SSS-EEbbxaxabpbx
1nof_A_3471nof   A351360AVNTNDSDQMEEE-SSS-EEbbbaxabxbx
1nxm_A_821nxm   A8493ISVADGGKVLEEE-SS--EEbbbabaxbbx
1o4t_A_1011o4t   A104113IENTGNTDLEEE--SSS-EEbbxababxxb
1od5_A_1311od5   A133142TYNTGDEPVVEEE-SSS-EEbbxaxaxxxb
1ogm_X_2801ogm   X280289IEYFTKQNFYEEE--SS-EEbbxaxabpbb
1ogs_A_4561ogs   A460469VLNRSSKDVPEEE-SSS-EEbbbaxabxbw
1ok0_A_201ok0   A2332ADNGCAETVTEEE-SSS-EEbbxaxabpbb
1p5v_A_1661p5v   A169178AENPSPFYMNEEE-SSS-EExbbaxabxbx
1pfo_*_3921pfo   -396405LDHSGAYVAQEEE--SS-EEbbbaxabxbb
1pm4_A_961pm4   A100109IKNNSSETSNEEE-SSS-EEbbxaxaxxbx
1poc_*_501poc   -5059LTNTASHTRLEE--SSS-EEbbxaxabxbb
1q5h_A_871q5h   A9099LFNFGKEKFEEEE-SSS-EExbbaxabpbb
1qwt_A_2801qwt   A283292AQRLGHCHTYEEE-SSS-EEbbxaxaxxbb
1qxr_A_1351qxr   A138147TVNIGDEPFIEEE-SSS-EEbbxababpbb
1row_A_171row   A2332LVNGGAEKIVEEE-SSS-EExbbaxabxbb
1rwr_A_2721rwr   A273282LSLKGAGVVSEEEEESS-EEbbbbbaxxbb
1sfp_*_761sfp   -8291YRSSGSIMTVEE-SSSEEEEbbxababbbb
1smd_*_4251smd   -428437VFNNDDWTFSEEE-SSS-EEbbbaxabpbb
1uxx_X_521uxx   X5968VASGADTPTNEEE--SS-EEbbbaxabxbx
1vj2_A_921vj2   A94103FRNDTDSEVEEE--SSS-EEbbbababxbb
1ygs_*_3961ygs   -399408VRCLSDHAVFEEE-SSS-EEbbxaxabxbb
2viu_A_1642viu   A168177MPNNDNFDKLEE--SSS-EEbxxaxabxbb
4ubp_B_274ubp   B3241VSNTGDRPIQEEE-SSS-EEbbxaxabxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1euw_A_961euw   A     EMCETHYL MERCURY ION Q - 96
1euw_A_961euw   A     GOLGLYCEROL Q - 96
1euw_A_961euw   A     GOLGLYCEROL L - 97
1euw_A_961euw   A     GOLGLYCEROL M - 98
1euw_A_961euw   A     GOLGLYCEROL I - 99
1euw_A_961euw   A     GOLGLYCEROL S - 100
1fi2_A_1371fi2   A     MNMANGANESE (II) ION H - 137
1fi2_A_1371fi2   A     MNMANGANESE (II) ION Q - 139
1fi2_A_1371fi2   A     MNMANGANESE (II) ION M - 149
1fi2_A_1371fi2   A     MNMANGANESE (II) ION V - 151
1fi2_A_1371fi2   A     MNMANGANESE (II) ION F - 153
1iby_A_471iby   A     HEZHEXANE-1,6-DIOL S - 56
1iby_A_471iby   A     HEZHEXANE-1,6-DIOL I - 58
1iby_A_471iby   A     CUCOPPER (II) ION S - 59
1iby_A_471iby   A     HEZHEXANE-1,6-DIOL S - 59
1iby_A_471iby   A     CUCOPPER (II) ION E - 60
1iby_A_471iby   A     HEZHEXANE-1,6-DIOL E - 60
1iby_A_471iby   A     CUCOPPER (II) ION G - 61
1j3q_A_1361j3q   A     FEFE (III) ION H - 137
1j3q_A_1361j3q   A     FEFE (III) ION Y - 153
1jsm_A_1601jsm   A     NAGN-ACETYL-D-GLUCOSAMINE N - 165
1jsm_A_1601jsm   A     NAGN-ACETYL-D-GLUCOSAMINE N - 166
1jsm_A_1601jsm   A     NAGN-ACETYL-D-GLUCOSAMINE T - 167
1juh_A_1101juh   A     CUCOPPER (II) ION H - 112
1juh_A_1101juh   A     EDO1,2-ETHANEDIOL H - 112
1juh_A_1101juh   A     EDO1,2-ETHANEDIOL F - 114
1juh_A_1101juh   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 117
1juh_A_1101juh   A     EDO1,2-ETHANEDIOL M - 123
1juh_A_3091juh   A     NAGN-ACETYL-D-GLUCOSAMINE S - 325
1mxg_A_3641mxg   A     MGMAGNESIUM ION R - 377
1o4t_A_1011o4t   A     MNMANGANESE (II) ION H - 102
1o4t_A_1011o4t   A     OXLOXALATE ION H - 102
1o4t_A_1011o4t   A     OXLOXALATE ION F - 114
1o4t_A_1011o4t   A     OXLOXALATE ION A - 116
1o4t_A_1011o4t   A     MNMANGANESE (II) ION I - 118
1o4t_A_1011o4t   A     OXLOXALATE ION I - 118
1od5_A_1311od5   A     CO3CARBONATE ION Y - 131
1od5_A_1311od5   A     CO3CARBONATE ION W - 132
1od5_A_1311od5   A     CO3CARBONATE ION T - 133
1od5_A_1311od5   A     CO3CARBONATE ION V - 141
1od5_A_1311od5   A     CO3CARBONATE ION A - 143
1poc_*_501poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE H - 56
1poc_*_501poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE T - 57
1poc_*_501poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE R - 58
1poc_*_501poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE L - 59
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE G - 87
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE V - 88
1q5h_A_871q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE V - 89
1qwt_A_2801qwt   A     PO4PHOSPHATE ION L - 281
1qwt_A_2801qwt   A     PO4PHOSPHATE ION Q - 284
1qwt_A_2801qwt   A     PO4PHOSPHATE ION G - 287
1qwt_A_2801qwt   A     PO4PHOSPHATE ION H - 288
1qxr_A_1351qxr   A     NINICKEL (II) ION H - 136
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID H - 136
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID R - 137
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID T - 138
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID F - 148
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID A - 150
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID I - 151
1qxr_A_1351qxr   A     NINICKEL (II) ION Y - 152
1qxr_A_1351qxr   A     PA55-PHOSPHOARABINONIC ACID Y - 152
1uxx_X_521uxx   X     XYPBETA-D-XYLOPYRANOSE G - 62
1uxx_X_521uxx   X     XYPBETA-D-XYLOPYRANOSE A - 63
1uxx_X_521uxx   X     XYPBETA-D-XYLOPYRANOSE D - 64
1uxx_X_521uxx   X     XYPBETA-D-XYLOPYRANOSE T - 65
1uxx_X_521uxx   X     XYPBETA-D-XYLOPYRANOSE P - 66
1vj2_A_921vj2   A     MNMANGANESE (II) ION H - 92
1vj2_A_921vj2   A     MNMANGANESE (II) ION F - 94
2viu_A_1642viu   A     NAGN-ACETYL-D-GLUCOSAMINE V - 166
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od5_A_1311od5   A AC1CO3 BINDING SITE FOR CHAIN AY - 131
1od5_A_1311od5   A AC1CO3 BINDING SITE FOR CHAIN AT - 133
1ogs_A_4561ogs   A AC8SO4 BINDING SITE FOR CHAIN AK - 473
1uxx_X_521uxx   X AC2XYP BINDING SITE FOR CHAIN XA - 63
1uxx_X_521uxx   X AC2XYP BINDING SITE FOR CHAIN XD - 64
1uxx_X_521uxx   X AC2XYP BINDING SITE FOR CHAIN XT - 65

Clusters included in this Subclass
CLUSTER: AR.4.106
CLUSTER: AR.4.11
CLUSTER: AR.4.145
CLUSTER: AR.5.265
CLUSTER: AR.5.3
CLUSTER: AR.5.64
CLUSTER: AR.5.70
CLUSTER: AR.5.95
CLUSTER: AR.6.229
CLUSTER: AR.6.35
CLUSTER: AR.6.5
CLUSTER: AR.6.54
CLUSTER: AR.6.79
CLUSTER: AR.7.72