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Information on SUBCLASS 5.2.1
Subclass Accession number: 3990
Subclass: 5.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 34

Average sequence ID (%) : 17.4 +/- 21.2
Average RMSD (Å) : 0.871 +/- 0.242

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XhXXXppXh
(φψ)-conformation: bbpaapabb
Pattern: xx[afilv][dgpst]x[adgkrst][cdeknqrst][adeknst]x[acfilmtv]x
Conservation:-0.999-0.3940.5791.929-1.0440.902-0.0770.613-0.9980.576-1.086
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3q_A_1201a3q   A122132VSVGPKDMTAQEEE-SS--EEEbbxpaaxabbb
1azc_A_191azc   A2030MVVDKSCKQFTEEEETT-SEEEbbxxaaxabbb
1bdq_A_181bdq   A2232ALLDTGADDSIEEE-TT-SSEEbxxbaababxb
1bxo_A_2031bxo   A210220GIADTGTTLLLEEE-TT-SSEEbbxbaababxb
1bxo_A_261bxo   A3040LNFDTGSADLWEEEETT---EEbxxbaababbb
1c6y_A_181c6y   A2232ALIDTGADDTVEEE-TT-SSEEbxxbaaxabbb
1cfb_*_6611cfb   -665675EKVPNTDSSFVEEEETT-SEEEblxpaaxabbx
1cfb_*_7631cfb   -766776NIFDWRQNNIVEE--TT--EEExbaxaaxabbb
1cuo_A_191cuo   A2030ISVPASCAEFTEEEETT-SEEEbbbxaaxabbb
1cv8_*_1481cv8   -148158MTQDAKNNVIPEEEETT--EEEbbbxaababxx
1ezv_A_2461ezv   A249259RLRDDTLPKAWEEE-TTSSSEEbapbaaxabbb
1fkn_A_251fkn   A2939ILVDTGSSNFAEEEETT---EEbxxbaababxb
1fna_*_461fna   -4858FTVPGSKSTATEEEETT--EEEbbbpaababbx
1fnf_*_11901fnf   -11921202EVVHADQSSCTEEE-TT--EEEbbbxaaxabbb
1fnf_*_12811fnf   -12831293LSISPSDNAVVEEE-TT--EEEbbbpaababbb
1fnf_*_13711fnf   -13731383DRVPHSRNSITEEEETT--EEEbbbxaaxabbb
1hrn_A_251hrn   A2939VVFDTGSSNVWEEEETT---EEbxxbaababbb
1htr_B_251htr   B2939VLFDTGSSNLWEEEETT---EEbxxbaababbb
1j71_A_2071j71   A215225VVLDSGTTITYEEE-TT-SSEEbxxxaababbb
1lf2_A_2041lf2   A211221CIVDSGTSAITEEE-TT--SEEbxxbaababxb
1lf2_A_271lf2   A3141FILDTGSANLWEEEETT---EEbxxbaababbb
1miq_A_2041miq   A211221VIVDSGTTTITEEE-TTBSSEEbxbbaaxabxb
1oew_A_281oew   A3242LDFDTGSSDLWEEEETT---EEbxxbaababbb
1ooa_A_1201ooa   A123133VTAGPKDMVVGEEE-SS--EEEbbbpaaxaxbb
1pfz_A_2041pfz   A211221CIVDSGTSAITEEE-TTBSSEEbxxbaababbx
1pl3_A_441pl3   A4858VVAPIASKWIGEEEETT--EEEbbbpaaxabbb
1pxv_A_3671pxv   A367377SIQDADSSLLHEEEETT--EEEbbbxaabaxxx
1qpx_A_81qpx   A919AVFDGSEKSMTEEEETTSSEEEbbxxaababbb
1qs8_A_2041qs8   A211221VIVDSGTTTITEEE-TT-SSEEbxxbaababbb
1rkr_A_191rkr   A2030ITVSKSCKQFTEEEETT-SEEEbbxxaaxabbb
1svb_*_1611svb   -163173ASFTISSEKTIEEEBTTB-EEEbbbbaababbb
1ten_*_8471ten   -849859IDLTEDENQYSEEEETT--EEEbbxxaaxabbb
1ygs_*_3331ygs   -339349FKVPSSCPIVTEEEETT-SEEExbxxaababbb
3cms_*_253cms   -2939VLFDTGSSDFWEEEETT---EEbxxbaabaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bdq_A_181bdq   A     IM1(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE L - 23
1bdq_A_181bdq   A     IM1(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE D - 25
1bdq_A_181bdq   A     IM1(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE G - 27
1bdq_A_181bdq   A     IM1(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE A - 28
1bdq_A_181bdq   A     IM1(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE D - 29
1bdq_A_181bdq   A     IM1(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE D - 30
1bdq_A_181bdq   A     IM1(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE S - 31
1bdq_A_181bdq   A     IM1(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE I - 32
1bxo_A_261bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE N - 31
1bxo_A_261bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE D - 33
1bxo_A_261bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE T - 34
1bxo_A_261bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE G - 35
1bxo_A_261bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE S - 36
1bxo_A_2031bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE I - 211
1bxo_A_2031bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE D - 213
1bxo_A_2031bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE T - 214
1bxo_A_2031bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE G - 215
1bxo_A_2031bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE T - 216
1bxo_A_2031bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE T - 217
1bxo_A_2031bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE L - 218
1bxo_A_2031bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE L - 220
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE L - 23
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE D - 25
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE T - 26
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE G - 27
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE A - 28
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE D - 29
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE D - 30
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE T - 31
1c6y_A_181c6y   A     MK1N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S) -HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE V - 32
1hrn_A_251hrn   A     CHA1-HYDROXY-2-AMINO-3-CYCLOHEXYLPROPANE V - 30
1hrn_A_251hrn   A     CHA1-HYDROXY-2-AMINO-3-CYCLOHEXYLPROPANE D - 32
1hrn_A_251hrn   A     IP31-HYDROXY-3-METHYLBUTANE D - 32
1hrn_A_251hrn   A     CHA1-HYDROXY-2-AMINO-3-CYCLOHEXYLPROPANE T - 33
1hrn_A_251hrn   A     CHA1-HYDROXY-2-AMINO-3-CYCLOHEXYLPROPANE G - 34
1hrn_A_251hrn   A     IP31-HYDROXY-3-METHYLBUTANE G - 34
1hrn_A_251hrn   A     CHA1-HYDROXY-2-AMINO-3-CYCLOHEXYLPROPANE S - 35
1hrn_A_251hrn   A     IP31-HYDROXY-3-METHYLBUTANE S - 35
1hrn_A_251hrn   A     CHA1-HYDROXY-2-AMINO-3-CYCLOHEXYLPROPANE W - 39
1j71_A_2071j71   A     EOHETHANOL D - 218
1j71_A_2071j71   A     EOHETHANOL T - 221
1j71_A_2071j71   A     EOHETHANOL Y - 225
1lf2_A_271lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE I - 32
1lf2_A_271lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE D - 34
1lf2_A_271lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE T - 35
1lf2_A_271lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE G - 36
1lf2_A_271lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE S - 37
1lf2_A_271lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE A - 38
1lf2_A_271lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE N - 39
1lf2_A_2041lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE I - 212
1lf2_A_2041lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE D - 214
1lf2_A_2041lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE S - 215
1lf2_A_2041lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE G - 216
1lf2_A_2041lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE T - 217
1lf2_A_2041lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE S - 218
1lf2_A_2041lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE A - 219
1lf2_A_2041lf2   A     R373-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE T - 221
1oew_A_281oew   A     SERSERINE D - 35
1oew_A_281oew   A     THRTHREONINE D - 35
1oew_A_281oew   A     SERSERINE G - 37
1oew_A_281oew   A     THRTHREONINE G - 37
1oew_A_281oew   A     SERSERINE S - 38
1oew_A_281oew   A     THRTHREONINE S - 38
1oew_A_281oew   A     THRTHREONINE S - 39
1oew_A_281oew   A     THRTHREONINE D - 40
1pl3_A_441pl3   A     NAGN-ACETYL-D-GLUCOSAMINE V - 49
1pl3_A_441pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 56
1pl3_A_441pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 57
1pl3_A_441pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 58
1pl3_A_441pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 59
1pl3_A_441pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 60
1qs8_A_2041qs8   A     STASTATINE D - 214
1qs8_A_2041qs8   A     STASTATINE S - 215
1qs8_A_2041qs8   A     STASTATINE G - 216
1qs8_A_2041qs8   A     STASTATINE T - 217
1qs8_A_2041qs8   A     IVAISOVALERIC ACID T - 218
1qs8_A_2041qs8   A     IVAISOVALERIC ACID T - 219
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bdq_A_181bdq   A IM1NULLD - 29
1bxo_A_261bxo   A CICCATALYTIC RESIDUESD - 33
1bxo_A_2031bxo   A CICCATALYTIC RESIDUESD - 213
1oew_A_281oew   A CATCATALYTIC SITED - 35
1oew_A_281oew   A AC1SER BINDING SITE FOR CHAIN AG - 37
1pfz_A_2041pfz   A ASPCATALYTIC RESIDUES IN THE MATURE ENZYME.D - 214

Clusters included in this Subclass
CLUSTER: AR.3.68
CLUSTER: AR.4.50
CLUSTER: AR.5.164
CLUSTER: AR.5.5
CLUSTER: AR.6.90