Logo
Information on SUBCLASS 5.2.2
Subclass Accession number: 3991
Subclass: 5.2.2 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005529 (>50 %)  GO:0030246 (>50 %)  
SCOP : 49898 (>50 %)  49899 (>50 %)  49932 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 25.0 +/- 21.1
Average RMSD (Å) : 0.967 +/- 0.379

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XVXXpXXph
(φψ)-conformation: bppaapabb
Pattern: [CV][LT][CR][IV]x[GV]x[V][APS]x[DEN][AD][KPS][ERS][FV]x[FLV][N][LW][GLY]
Conservation:0.308-0.107-0.0871.205-0.647-0.370-1.0111.540-0.352-0.6810.471-0.348-0.435-0.4350.334-1.011-0.2703.0220.212-1.340
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bkz_A_181bkz   A1837VLRIRGLVPPNASRFHVNLLEEEEEEEE-TT--BEEEEEEbbbbbbbxxaapabbbbbbx
1l6x_A_2581l6x   A259278VTCVVVDVSHEDPEVKFNWYEEEEEEEE-SSS---EEEEEbbbbbbvxxaabaxbbbbbb
1slt_A_161slt   A1635CLRVRGEVAADAKSFLLNLGEEEEEEEE-TT--BEEEEEEbbbbbbbxpaapabbbbbbe
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1l6x_A_2581l6x   A     GALD-GALACTOSE E - 258
1l6x_A_2581l6x   A     GALD-GALACTOSE V - 259
1l6x_A_2581l6x   A     NAGN-ACETYL-D-GLUCOSAMINE T - 260
1l6x_A_2581l6x   A     GALD-GALACTOSE T - 260
1l6x_A_2581l6x   A     NAGN-ACETYL-D-GLUCOSAMINE V - 262
1l6x_A_2581l6x   A     NAGN-ACETYL-D-GLUCOSAMINE V - 264
1l6x_A_2581l6x   A     NAGN-ACETYL-D-GLUCOSAMINE D - 265
1slt_A_161slt   A     CYOOXYGENS BOUND TO CYS SG C - 16
1slt_A_161slt   A     CYOOXYGENS BOUND TO CYS SG L - 17
1slt_A_161slt   A     CYOOXYGENS BOUND TO CYS SG R - 18
1slt_A_161slt   A     CYOOXYGENS BOUND TO CYS SG V - 19
1slt_A_161slt   A     CYOOXYGENS BOUND TO CYS SG R - 20
1slt_A_161slt   A     GALD-GALACTOSE L - 31

Clusters included in this Subclass
CLUSTER: AR.7.154