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Information on SUBCLASS 5.3.1
Subclass Accession number: 3994
Subclass: 5.3.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 21.1 +/- 28.3
Average RMSD (Å) : 0.820 +/- 0.282

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXppXXpXh
(φψ)-conformation: bbabpbabb
Pattern: x[dnptv]x[adekqrt][dhknqrst]xx[adenrst][acgnst][AGIPVWY][aknst][afgilvw]
Conservation:0.142-0.7450.5081.091-0.201-1.219-1.2310.4531.259-0.7761.641-0.922
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a78_A_1061a78   A109120FPVRKVLPSIPFEE-SS--SSEEEbxxabxbabbab
1bk1_*_1231bk1   -132143SVRESTRTSGTVEEESS--SEEEEbbxabpbabebb
1f5j_A_1351f5j   A142153SVRTSKRTSGTVEEESS--SEEEEbbxabxbabebb
1h0b_A_1621h0b   A166177YRRTTPTTSVSEEEESS--SEEEEbbpabxbabbbl
1h4g_A_1391h4g   A146157SVRRSKRTSGTIEEESS--SEEEEbbxabxbabebb
1igo_A_1381igo   A145156SVRQTKRTSGTVEEESS--SEEEEbbxabxbabebb
1j0m_A_7291j0m   A732743IELARSAEGYSAEEESS--SEEEEbbbabbbabbbb
1j1l_A_1591j1l   A159170IKSKVYTRTPTLEE-----SS-EEbxxaxxbabpbb
1jmx_B_2861jmx   B291302ANLDHTYYCVAFEE-SS---EEEEbxbabxbabxbb
1jz7_A_8811jz7   A886897CQLAQVAERVNWEEES---SEEEEbbxaxbbabbbb
1k3i_A_1601k3i   A165176IDLPIVPAAAAIEE-SS--SEEEEbxbabxxabbbx
1ks5_A_1561ks5   A163174FVSESPINSYSGEE-SS--SEEEEbbxabpbabbbe
1m4w_A_1311m4w   A138149SVRQQKRTSGTIEEESS--SEEEEbbxabpbabebb
1oa2_A_1541oa2   A159170FVAQTNTTNYSGEEESS--SEEEExbxabpbabbbb
1oa3_A_1541oa3   A159170FVAQSNTTSYSGEEESS--SEEEEbbxabxxabbbb
1pvx_A_1301pvx   A139150SVRQDKRSSGTVEEESS--SSEEEbbxabpbabebb
1ug9_A_8641ug9   A864875INLEHAWDSVIVEEESS--SEEEEbbbabxbabbbb
1utc_A_971utc   A102113HTMTDDVTFWKWEE-SS---EEEEbbxabpxabbbx
1xyo_A_1321xyo   A139150SVRRNHRSSGSVEEESS--SSEEEbbxaxxbabebb
1yna_*_1301yna   -139150SVRQDKRTSGTVEEESS--SSEEEbbxaxpbabebb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a78_A_1061a78   A     TDGTHIODIGALACTOSIDE E - 124
1h0b_A_1621h0b   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID Y - 163
1h4g_A_1391h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE F - 141
1h4g_A_1391h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE Q - 143
1jz7_A_8811jz7   A     GALD-GALACTOSE L - 898
1k3i_A_1601k3i   A     CACALCIUM ION E - 177
1oa2_A_1541oa2   A     NAGN-ACETYL-D-GLUCOSAMINE V - 160
1oa2_A_1541oa2   A     NAGN-ACETYL-D-GLUCOSAMINE A - 161
1oa2_A_1541oa2   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 162
1oa2_A_1541oa2   A     NAGN-ACETYL-D-GLUCOSAMINE T - 163
1oa2_A_1541oa2   A     NAGN-ACETYL-D-GLUCOSAMINE N - 164
1oa3_A_1541oa3   A     NAGN-ACETYL-D-GLUCOSAMINE S - 163
1oa3_A_1541oa3   A     NAGN-ACETYL-D-GLUCOSAMINE T - 165
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oa2_A_1541oa2   A AC1NAG BINDING SITE FOR CHAIN AA - 161
1oa2_A_1541oa2   A AC1NAG BINDING SITE FOR CHAIN AN - 164

Clusters included in this Subclass
CLUSTER: AR.5.26
CLUSTER: AR.6.114
CLUSTER: AR.6.201
CLUSTER: AR.6.29
CLUSTER: AR.7.62