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Information on SUBCLASS 5.5.1
Subclass Accession number: 3999
Subclass: 5.5.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 13.9 +/- 19.9
Average RMSD (Å) : 0.480 +/- 0.162

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: hphXpXppX
(φψ)-conformation: bbaaapabb
Pattern: xx[ilv][DENPQRS][aflpv]x[DEHK]xx[eknqsty]x
Conservation:-1.000-1.0001.5470.026-1.271-0.6311.6630.157-0.619-0.292-0.579
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ciy_*_4701ciy   -471481TQIPLTKSTNLEEEEGGG-SEExbbxaaaxabx
1dlc_*_5091dlc   -510520TQLPLVKAYKLEEEEGGG-SEEbxbxaaaxabb
1h30_A_6511h30   A651661RLLDLDEAAYKEE--GGGSSEEbxxbaaaxabb
1i5p_A_4931i5p   A494504FTISPIHATQVEEE-TTS-SEEbbbxaaaxabb
1ji6_A_5121ji6   A513523TQLPVVKAYALEEEEGGG-SEEbxbxaaaxabb
1od3_A_291od3   A2937..IQAEDYDSS..EETT--SEE..bxaaaxabb
1okq_A_30971okq   A30973107LEVNFAKALELEE--GGG-SEEbxxbaaaxabb
1ug9_A_681ug9   A6877.AQRESEQTTR.EEEGGG-SEE.bbbaaaxabb
1uxx_X_71uxx   X715..IESEEYNSL..EEGGG-SEE..bxaaaxabb
1uxz_A_21uxz   A414ATIQAEDHSQQEEEEGGG-SEEbbbxaaaxabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h30_A_6511h30   A     CACALCIUM ION D - 654
1h30_A_6511h30   A     CACALCIUM ION D - 656
1od3_A_291od3   A     CACALCIUM ION Q - 30
1od3_A_291od3   A     CACALCIUM ION A - 31
1od3_A_291od3   A     BGCBETA-D-GLUCOSE E - 32
1od3_A_291od3   A     CACALCIUM ION E - 32
1od3_A_291od3   A     BGCBETA-D-GLUCOSE D - 33
1od3_A_291od3   A     BGCBETA-D-GLUCOSE Y - 34
1od3_A_291od3   A     BGCBETA-D-GLUCOSE D - 35
1od3_A_291od3   A     BGCBETA-D-GLUCOSE S - 36
1uxx_X_71uxx   X     CACALCIUM ION E - 8
1uxx_X_71uxx   X     CACALCIUM ION S - 9
1uxx_X_71uxx   X     CACALCIUM ION E - 10
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h30_A_6511h30   A CAACA BINDING SITE FOR CHAIN AD - 656
1od3_A_291od3   A AC4CA BINDING SITE FOR CHAIN AQ - 30
1od3_A_291od3   A AC4CA BINDING SITE FOR CHAIN AE - 32
1od3_A_291od3   A AC5BGC BINDING SITE FOR CHAIN AD - 33
1od3_A_291od3   A AC5BGC BINDING SITE FOR CHAIN AY - 34
1uxx_X_71uxx   X AC1CA BINDING SITE FOR CHAIN XE - 8
1uxx_X_71uxx   X AC1CA BINDING SITE FOR CHAIN XE - 10

Clusters included in this Subclass
CLUSTER: AR.5.65
CLUSTER: AR.6.32
CLUSTER: AR.7.99