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Information on SUBCLASS 0.1.4
Subclass Accession number: 4
Subclass: 0.1.4 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 22

Average sequence ID (%) : 10.3 +/- 14.8
Average RMSD (Å) : 0.545 +/- 0.179

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXXX
(φψ)-conformation: aabb
Pattern: xxxx[adegkqrst]xxx
Conservation:1.154-0.549-0.8880.3481.357-1.4250.543-0.539
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1brw_A_4051brw   A409416EKIEAAIRHHHHTTEEaaaaaaxb
1cex_*_1351cex   -135142SAIRDKIAHHHHTTEEaaaaaaxa
1dpg_A_691dpg   A7380EAFIEHFSHHHHTTEEaaaaaabb
1elj_A_961elj   A97104MAQDAMQYHHHHHTEEaaaaaabb
1eo9_B_4981eo9   B499506QQRRALIAHHHHTTEEaaaaaabx
1f0x_A_4751f0x   A475482PEIDSQLVHHHHTTEEaaaaaaba
1ih7_A_1801ih7   A180187SEIIDKIIHHHHTTEEaaaaaaxb
1m1n_A_221m1n   A2633KDRNKHLAHHHHTTEEaaaaaabb
1mdo_A_3491mdo   A352359EWNSERICHHHHTTEEaaaaaaxb
1mj4_A_681mj4   A7279ELLAQYKIHHHHTTEEaaaaaaxa
1n4q_B_691n4q   B7481EWIYSLQVHHHHTTEEaaaaaaxx
1nw1_A_3101nw1   A317324HFIEWTIDHHHHTTEEaaaaaabb
1oh4_A_161oh4   A1623PEEVKNWWHHHHTTEEaaaaaabb
1qq9_A_1471qq9   A147154SADRSKLAHHHHTTEEaaaaaaxa
1rif_A_191rif   A2431ELRDFFSFHHHHHTEEaaaaaabb
1sox_A_681sox   A7279ELLQQYKVHHHHTTEEaaaaaaxa
1tca_*_131tca   -1421SVLDAGLTHHHHHTEEaaaaaabb
1urs_A_1211urs   A122129NTIDAIKVHHHHTTEEaaaaaaxb
1ycq_A_921ycq   A97104AMISRNLVHHHHTTEEaaaaaaba
2pva_A_1162pva   A120127IEKLTSYTHHHHTTEEaaaaaabb
3mbp_*_913mbp   -9299FTWDAVRYHHHHTTEEaaaaaaxb
3thi_A_933thi   A94101FALQGAKRHHHHHTEEaaaaaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f0x_A_4751f0x   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 489
1mdo_A_3491mdo   A     MSESELENOMETHIONINE T - 351
1mdo_A_3491mdo   A     MSESELENOMETHIONINE E - 352
1mdo_A_3491mdo   A     MSESELENOMETHIONINE N - 354
1mdo_A_3491mdo   A     MSESELENOMETHIONINE S - 355
1mdo_A_3491mdo   A     MSESELENOMETHIONINE I - 358
1mdo_A_3491mdo   A     MSESELENOMETHIONINE C - 359
1mdo_A_3491mdo   A     MSESELENOMETHIONINE L - 361
1mj4_A_681mj4   A     SULSULFATE ANION S - 68
1mj4_A_681mj4   A     SULSULFATE ANION H - 69
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 69
1mj4_A_681mj4   A     GOLGLYCEROL H - 69
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 70
1mj4_A_681mj4   A     GOLGLYCEROL V - 70
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 73
1mj4_A_681mj4   A     GOLGLYCEROL L - 73
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 74
1nw1_A_3101nw1   A     CACALCIUM ION I - 319
1nw1_A_3101nw1   A     CACALCIUM ION E - 320
1nw1_A_3101nw1   A     CACALCIUM ION W - 321
1nw1_A_3101nw1   A     CACALCIUM ION T - 322
1nw1_A_3101nw1   A     CACALCIUM ION I - 323
1nw1_A_3101nw1   A     CACALCIUM ION D - 324
1oh4_A_161oh4   A     GOLGLYCEROL P - 16
1oh4_A_161oh4   A     GOLGLYCEROL E - 18
1oh4_A_161oh4   A     GOLGLYCEROL V - 19
1oh4_A_161oh4   A     GOLGLYCEROL K - 20
1oh4_A_161oh4   A     GOLGLYCEROL N - 21
1oh4_A_161oh4   A     GOLGLYCEROL W - 22
1oh4_A_161oh4   A     GOLGLYCEROL W - 23
1oh4_A_161oh4   A     GOLGLYCEROL N - 24
1oh4_A_161oh4   A     BMABETA-D-MANNOSE S - 25
1oh4_A_161oh4   A     BMABETA-D-MANNOSE G - 26
1oh4_A_161oh4   A     BMABETA-D-MANNOSE T - 27
1oh4_A_161oh4   A     BMABETA-D-MANNOSE W - 28
1oh4_A_161oh4   A     GLAALPHA D-GALACTOSE W - 28
1qq9_A_1471qq9   A     METMETHIONINE N - 158
1sox_A_681sox   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 77
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oh4_A_161oh4   A AC9GOL BINDING SITE FOR CHAIN AE - 18
1oh4_A_161oh4   A AC8GOL BINDING SITE FOR CHAIN AW - 22
1oh4_A_161oh4   A AC6GLA BINDING SITE FOR CHAIN AW - 28

Clusters included in this Subclass
CLUSTER: HE.1.16
CLUSTER: HE.2.24
CLUSTER: HE.3.22
CLUSTER: HE.3.83