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Information on SUBCLASS 5.5.2
Subclass Accession number: 4000
Subclass: 5.5.2 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 10.9 +/- 14.0
Average RMSD (Å) : 0.967 +/- 0.314

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: hXhpphpXh
(φψ)-conformation: bbaaapabb
Pattern: [ACILW][dnps][FGL][HKST][EKNR][civy][DHKRSY][aknr][AIVWY][aqt][aefkl]
Conservation:-0.331-0.6000.5200.8702.370-0.028-0.471-0.489-0.021-0.291-1.529
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1eaz_A_2331eaz   A235245IPLKEVHKVQEEEGGG--EEEEbxaaaxabbbp
1fao_A_2061fao   A208218LDLTECSAVQFEEGGG--EEEEbbaaaxabbbx
1g5b_A_41g5b   A717IDGSKYRNIWVEEGGG-S-EEEbxaaababbbb
1j7n_A_1111j7n   A112122ALLHEHYVYAKEEGGG-SEEEEbbaaaxabbbx
1m3y_A_3691m3y   A369379CNFSRIDNATLEETTS-S-EEEbxaaaxabbbb
1mix_A_3471mix   A351361WSLTNIKRWAAEEGGG--EEEEbxaaaxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1eaz_A_2331eaz   A     CITCITRIC ACID R - 233
1fao_A_2061fao   A     ITSINOSITOL 1,3,4,5-TETRAKISPHOSPHATE R - 206
1m3y_A_3691m3y   A     HGMERCURY (II) ION C - 369
1m3y_A_3691m3y   A     HGMERCURY (II) ION N - 370
1m3y_A_3691m3y   A     HGMERCURY (II) ION F - 371
1m3y_A_3691m3y   A     HGMERCURY (II) ION I - 374
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1eaz_A_2331eaz   A LBSLBS STANDS FOR LIPID BINDING SITE. CB ATOM RESPONSIBLE FOR THE NOVEL SPECIFICITY OF THIS DOMAIN. THE ALANINE AT A1024 (203) IN TAPP1, IN DAPP1 ID A GLY, WHICH CAN BIND BOTH (3,4)P2, AND (3,4,5) P3R - 233

Clusters included in this Subclass
CLUSTER: AR.5.187
CLUSTER: AR.5.235
CLUSTER: AR.6.104