Logo
Information on SUBCLASS 5.40.1
Subclass Accession number: 401
Subclass: 5.40.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.7 (>50 %)  2.7 (>75 %)  
GO : GO:0003677 (>75 %)  GO:0003684 (>75 %)  GO:0005524 (>50 %)  GO:0016301 (>50 %)  GO:0016301 (>75 %)  GO:0016772 (>50 %)  GO:0016772 (>75 %)  GO:0016788 (>50 %)  GO:0016791 (>50 %)  GO:0030554 (>50 %)  GO:0042578 (>50 %)  
SCOP : 48333 (>75 %)  48334 (>75 %)  48335 (>75 %)  52539 (>75 %)  52540 (>75 %)  52686 (>75 %)  53253 (>50 %)  53254 (>50 %)  53267 (>50 %)  
Number of loops: 2

Average sequence ID (%) : 12.5 +/- 0.0
Average RMSD (Å) : 0.400 +/- 0.000

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: phGXpphhh
(φψ)-conformation: aalaaappb
Pattern: [AP][AV][DE][A][AL][AR][EQ][IL][G][MR][EH][DR][IV][MP][IL]x
Conservation:-0.532-0.7420.7280.938-1.162-0.9520.5180.0982.617-0.7420.308-0.9520.518-0.7420.098-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jx6_A_2661jx6   A272286AVDALAELGREDIMI.HHHHHHHHT-TTSEE.aaaaaaaavaaaxxb.
1ufy_A_581ufy   A5873PAEAARQIGMHRVPLLHHHHHHHTTGGGS-EEaaaaaaaavaaaxwbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jx6_A_2661jx6   A     AI23A-METHYL-5,6-DIHYDRO-FURO[2,3-D][1,3,2]DIOXABOROLE-2, 2,6,6A-TETRAOL T - 266
1jx6_A_2661jx6   A     AI23A-METHYL-5,6-DIHYDRO-FURO[2,3-D][1,3,2]DIOXABOROLE-2, 2,6,6A-TETRAOL D - 267
1ufy_A_581ufy   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Q - 64
1ufy_A_581ufy   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID I - 65

Clusters included in this Subclass
CLUSTER: HE.6.122