ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.43.1

Subclass Accession number: 4047
Subclass: 5.43.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 57.8 +/- -1.8
Average RMSD (Å) : 0.400 +/- 0.100

Consensus geometry

d (Å): 19

delta (°): 0-45

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	PXXTXYEpc
(φψ)-conformation:	wbppaaabb

Pattern:	[I]	[IV]	[L]	[P]	[AT]	[ACT]	[T]	[STW]	[Y]	[E]	[KR]	[DN]	[D]	[IM]	[DEN]
Conservation:	0.032	-0.249	0.032	1.732	-0.975	-1.227	0.599	-1.479	1.732	0.599	-0.244	-0.239	1.166	-0.694	-0.786

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1eu1_A_471	1eu1	A	471	485	IVLPATTSYERNDIE	EEEEB--GGGS-EEE	bbbxxxxaaabbbbb
1q16_A_784	1q16	A	784	798	IILPTATWYEKDDMN	EEEEB--TTSS-EEE	bbbwbxxaaabxbbb
1tmo_*_480	1tmo	-	480	494	IVLPACTTYERNDID	EEEEB--GGGS-EEE	bbbwbxxaaabbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	A - 475
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	T - 476
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	T - 477
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	S - 478
1eu1_A_471	1eu1	A	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	R - 481
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	L - 482
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	A - 484
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	C - 485
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	T - 487
1tmo_*_480	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	R - 490

Clusters included in this Subclass

CLUSTER: AR.7.91