Information on SUBCLASS 5.3.1 |
Subclass Accession number: 41
Subclass: 5.3.1 Type: EH beta-alpha DB: ArchDB-KI |
Number of loops: 5 Average sequence ID (%) : 72.5 +/- 2.0 Average RMSD (Å) : 0.29 +/- 0.06 Consensus geometry
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Consensus Sequence: | FASFIRKAX |
(φψ)-conformation: | ppplpabaa |
Pattern: | [FM] | [V] | [AF] | [A] | [S] | [F] | [I] | [R] | [KT] | {A} | {NS} | [D] | [V] | x | [ET] | [IV] | [R] | [EK] | {IV} | [L] |
Conservation: | -0.388 | 0.434 | -1.023 | 0.434 | 0.434 | 1.744 | 0.434 | 1.089 | -0.805 | -1.043 | -1.092 | 1.744 | 0.434 | -1.608 | -0.805 | 0.112 | 1.089 | -0.201 | -1.417 | 0.434 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a3w_A_209 | 1a3w | A | 209 | 228 | MVFASFIRTANDVLTIREVL | EEEE-S--SHHHHHHHHHHH | bbxpblxabaaaaaaaaaaa |
1a49_A_238 | 1a49 | A | 238 | 257 | MVFASFIRKAADVHEVRKIL | EEEETT--SHHHHHHHHHHH | bbxxplxabaaaaaaaaaaa |
1pkm_*_238 | 1pkm | - | 238 | 257 | MVFASFIRKASDVHEVRKVL | EEEES---SHHHHHHHHHHH | bbxxxlxabaaaaaaaaaaa |
1pkn_*_238 | 1pkn | - | 238 | 257 | MVFASFIRKAADVHEVRKIL | EEEES---SSHHHHHHHHHH | bbxxxlbabaaaaaaaaaaa |
1pky_A_188 | 1pky | A | 188 | 207 | FVAASFIRKRSDVIEIREHL | EEEES---SHHHHHHHHHHH | bbxbxvxabaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a3w_A_209 | 1a3w | A | MNMANGANESE (II) ION | S - 213 |
1a3w_A_209 | 1a3w | A | PGA2-PHOSPHOGLYCOLIC ACID | S - 213 |
1a3w_A_209 | 1a3w | A | MNMANGANESE (II) ION | F - 214 |
1a3w_A_209 | 1a3w | A | PGA2-PHOSPHOGLYCOLIC ACID | F - 214 |
1a49_A_238 | 1a49 | A | OXLOXALATE ION | S - 242 |
1a49_A_238 | 1a49 | A | MGMAGNESIUM ION | S - 242 |
1a49_A_238 | 1a49 | A | ATPADENOSINE-5'-TRIPHOSPHATE | S - 242 |
1a49_A_238 | 1a49 | A | OXLOXALATE ION | F - 243 |
1a49_A_238 | 1a49 | A | MGMAGNESIUM ION | F - 243 |
1pkn_*_238 | 1pkn | * | PYRPYRUVIC ACID | S - 242 |
1pkn_*_238 | 1pkn | * | MNMANGANESE (II) ION | S - 242 |
1pkn_*_238 | 1pkn | * | PYRPYRUVIC ACID | F - 243 |
1pkn_*_238 | 1pkn | * | MNMANGANESE (II) ION | F - 243 |
Bibliographic annotations |
Loop | PDB | Chain | Annotation | Residue |
1a3w_A_209 | 1a3w RefM.S.JURICA,A.MESECAR,P.J.HEATH,W.SHI,T.NOWAK,B.L.STODDARD. THE ALLOSTERIC REGULATION OF PYRUVATE KINASE BY FRUCTOSE-1,6-BISPHOSPHATE STRUCTURE (LONDON) v.6;195,1998 | A | CATALYTIC RESIDUE | S - 213 |
Clusters included in this Subclass |
CLUSTER: EH.5.3 |