ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.7.1

Subclass Accession number: 417
Subclass: 6.7.1

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
SCOP : 56058 (>75 %) 56059 (>75 %)

Number of loops: 7

Average sequence ID (%) : 13.5 +/- 13.9
Average RMSD (Å) : 0.857 +/- 0.172

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XhchXXpXXh
(φψ)-conformation:	aalppaapbb

Pattern:	[aiptv]	x	[EKNRST]	[adnq]	[AFL]	[acilv]	x	[aknq]	[alm]	[DGNQ]	[ILVY]	[HKPR]	[knpqs]	[DENQS]	x	x	[AFVY]	x
Conservation:	-0.905	-1.277	0.263	-0.791	1.099	-0.746	-1.300	-0.269	0.697	1.267	1.448	1.367	-0.790	1.361	-0.084	-0.824	0.442	-0.956

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1afw_A_100	1afw	A	102	119	EHRAACLASGIPYSTPFV	HHHHHHHHTT--TTS-EE	aaaaaaaaagxwaaxxbb
1bjn_A_44	1bjn	A	53	70	AEKDFRDLLNVPSNYKVL	HHHHHHHHHT--TTEEEE	aaaaaaaaalxpaabbbb
1cmx_A_15	1cmx	A	17	34	VFTNFAHKLGLKNEWAYF	HHHHHHHHHTB-TTEEEE	aaaaaaaaaNppaabbxb
1d0n_A_331	1d0n	A	334	351	TASDFISKMDYPKQTQVS	HHHHHHHHTT--TT-EEE	aaaaaaaaalbxaapxbb
1hzp_A_248	1hzp	A	250	266	INELLVKNLQLRPDAVV.	HHHHHHHHTT--TT-EE.	aaaaaaaaavxxaaxxb.
1m3k_A_66	1m3k	A	66	83	PARQAAMKAGVPQEATAW	HHHHHHHHTT--TTSEEE	aaaaaaaaavxxaaxbbb
1uch_*_13	1uch	-	15	32	VTNQFLKQLGLHPNWQFV	HHHHHHHHTTB-TTEEEE	aaaaaaaaagxxaabbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1afw_A_100	1afw	A	MPD2-METHYL-2,4-PENTANEDIOL	T - 101
1hzp_A_248	1hzp	A	GOLGLYCEROL	S - 248
1hzp_A_248	1hzp	A	DAOLAURIC ACID	R - 249
1hzp_A_248	1hzp	A	GOLGLYCEROL	R - 249
1hzp_A_248	1hzp	A	DAOLAURIC ACID	I - 250
1hzp_A_248	1hzp	A	GOLGLYCEROL	E - 252
1hzp_A_248	1hzp	A	GOLGLYCEROL	V - 255
1hzp_A_248	1hzp	A	GOLGLYCEROL	K - 256
1hzp_A_248	1hzp	A	GOLGLYCEROL	Q - 259
1hzp_A_248	1hzp	A	GOLGLYCEROL	L - 260
1hzp_A_248	1hzp	A	GOLGLYCEROL	R - 261
1hzp_A_248	1hzp	A	GOLGLYCEROL	P - 262
1hzp_A_248	1hzp	A	GOLGLYCEROL	D - 263
1hzp_A_248	1hzp	A	GOLGLYCEROL	V - 265

Clusters included in this Subclass

CLUSTER: HE.5.209

CLUSTER: HE.6.30

CLUSTER: HE.8.16