ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 8.8.2

Subclass Accession number: 4197
Subclass: 8.8.2

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0005529 (>75 %) GO:0030246 (>75 %)
SCOP : 50352 (>75 %) 50370 (>75 %) 50371 (>75 %)

Number of loops: 5

Average sequence ID (%) : 38.0 +/- 31.1
Average RMSD (Å) : 0.240 +/- 0.055

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	hpXXphXhpQhW
(φψ)-conformation:	bbppalpaaabb

Pattern:	[IT]	[ILV]	[QWY]	[PT]	[aly]	[DET]	[GY]	[knt]	[LMP]	[GNR]	[Q]	[GIM]	[W]	[l]	[APT]
Conservation:	-0.207	0.144	-0.121	0.059	-0.891	-0.246	-0.207	-0.708	-0.454	-0.257	1.001	-0.757	3.240	-0.288	-0.307

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1abr_B_124	1abr	B	124	138	TVQTNEYLMRQGWRT	EEE-----GGG--EE	bbbxxalxaaabbbx
1abr_B_250	1abr	B	251	265	ILWPYTGKPNQIWLT	EEE-----GGG--EE	bxbxxavxaaaxbbx
1m2t_B_367	1m2t	B	367	381	TVQTLDYTLGQGWLA	EEE-----GGG--EE	bbbxpavxaaaxbbx
1m2t_B_493	1m2t	B	494	508	IIYPATGNPNQMWLP	EEE-----GGG--EE	bxbpxavxaaabbbw
1onk_B_246	1onk	B	247	261	IIYPATGKPNQMWLP	EEE-----GGG--EE	bxbpxavxaaabbbw

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1abr_B_124	1abr	B	NAGN-ACETYL-D-GLUCOSAMINE	N - 128
1abr_B_124	1abr	B	NAGN-ACETYL-D-GLUCOSAMINE	Y - 130
1m2t_B_367	1m2t	B	NAGN-ACETYL-D-GLUCOSAMINE	L - 371
1m2t_B_367	1m2t	B	NAGN-ACETYL-D-GLUCOSAMINE	Y - 373
1m2t_B_367	1m2t	B	GOLGLYCEROL	L - 380
1m2t_B_493	1m2t	B	GOLGLYCEROL	I - 494
1m2t_B_493	1m2t	B	GOLGLYCEROL	Y - 496
1m2t_B_493	1m2t	B	GOLGLYCEROL	P - 497
1m2t_B_493	1m2t	B	GOLGLYCEROL	T - 499
1m2t_B_493	1m2t	B	GOLGLYCEROL	N - 501
1m2t_B_493	1m2t	B	GOLGLYCEROL	P - 502
1m2t_B_493	1m2t	B	GOLGLYCEROL	N - 503
1m2t_B_493	1m2t	B	GOLGLYCEROL	Q - 504
1m2t_B_493	1m2t	B	GOLGLYCEROL	M - 505
1m2t_B_493	1m2t	B	GOLGLYCEROL	W - 506
1m2t_B_493	1m2t	B	GOLGLYCEROL	L - 507
1m2t_B_493	1m2t	B	GOLGLYCEROL	V - 509
1onk_B_246	1onk	B	AZIAZIDE ION	I - 247
1onk_B_246	1onk	B	AZIAZIDE ION	Y - 249
1onk_B_246	1onk	B	AZIAZIDE ION	T - 252
1onk_B_246	1onk	B	AZIAZIDE ION	N - 256
1onk_B_246	1onk	B	AZIAZIDE ION	Q - 257
1onk_B_246	1onk	B	AZIAZIDE ION	L - 260
1onk_B_246	1onk	B	AZIAZIDE ION	V - 262
1onk_B_246	1onk	B	GOLGLYCEROL	V - 262

Clusters included in this Subclass

CLUSTER: AR.9.31