ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 8.13.1

Subclass Accession number: 4202
Subclass: 8.13.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 36.8 +/- 25.2
Average RMSD (Å) : 0.562 +/- 0.200

Consensus geometry

d (Å): 19

delta (°): 45-90

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	RppXFPFpXGpX
(φψ)-conformation:	bbapbabbplbb

Pattern:	[deq]	[ER]	[EKQS]	[AEKST]	[adnv]	[FM]	[PT]	[FL]	[EQST]	[dkpqs]	[G]	[ADKQS]	x	[AFV]	[EKMQ]	[ILTV]	[CQST]	[FILV]	[est]	[FVY]
Conservation:	-0.356	0.854	-0.244	-0.684	-1.332	1.250	1.410	1.206	-0.186	-0.965	2.587	-0.736	-1.278	-0.397	-0.136	0.008	-0.560	0.117	-0.696	0.139

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a3k_*_185	1a3k	-	185	204	ERQSVFPFESGKPFKIQVLV	EEE------TT-EEEEEEEE	bbbaxbaxbpvbxbbbbbbx
1a78_A_73	1a78	A	73	92	QREEVFPFQQGAEVMVCFEY	EEE------TTSEEEEEEEE	bxbaxbabbxlbxbbbbbbb
1c1l_A_74	1c1l	A	74	93	QRSTNFTLSAGQYFEITLSY	EEE------TT-EEEEEEEE	bbbaxbaxbpvxxbbbbbbb
1g86_A_76	1g86	A	76	95	VESKNMPFQDGQEFELSISV	EEE------TT--EEEEEEE	bbbaxbaxxpvbxbbbbbbx
1gzw_A_72	1gzw	A	72	91	QREAVFPFQPGSVAEVCITF	EE-S-----TTSEEEEEEEE	bbxabbabbpvbxbbbbbbx
1is3_A_73	1is3	A	73	92	ERSKKFPFTKGDHFQTTITF	EEE------TTSEEEEEEEE	bbbaxbabbpvbxbbbbbbb
1qmj_A_72	1qmj	A	72	91	DRKADFPFQQGDKVEICISF	EEES-----TT-EEEEEEEE	bxxaxbabbxvxxbbbbbbb
1slt_A_72	1slt	A	72	91	QRESAFPFQPGSVVEVCISF	EEE------TT-EEEEEEEE	bbbapbabbxvbbbbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a3k_*_185	1a3k	*	NAGN-ACETYL-D-GLUCOSAMINE	R - 186
1a78_A_73	1a78	A	TDGTHIODIGALACTOSIDE	R - 74
1a78_A_73	1a78	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	V - 88
1a78_A_73	1a78	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	C - 89
1a78_A_73	1a78	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	F - 90
1c1l_A_74	1c1l	A	GLCGLUCOSE	R - 75
1g86_A_76	1g86	A	NEQN-ETHYLMALEIMIDE	D - 85
1g86_A_76	1g86	A	NEQN-ETHYLMALEIMIDE	G - 86
1g86_A_76	1g86	A	NEQN-ETHYLMALEIMIDE	Q - 87
1gzw_A_72	1gzw	A	BGCBETA-D-GLUCOSE	R - 73
1gzw_A_72	1gzw	A	SEO2-MERCAPTOETHANOL	E - 86
1gzw_A_72	1gzw	A	CSOS-HYDROXYCYSTEINE	V - 87
1gzw_A_72	1gzw	A	SEO2-MERCAPTOETHANOL	V - 87
1gzw_A_72	1gzw	A	CSOS-HYDROXYCYSTEINE	C - 88
1gzw_A_72	1gzw	A	SEO2-MERCAPTOETHANOL	C - 88
1gzw_A_72	1gzw	A	CSOS-HYDROXYCYSTEINE	I - 89
1gzw_A_72	1gzw	A	CSOS-HYDROXYCYSTEINE	T - 90
1gzw_A_72	1gzw	A	CSOS-HYDROXYCYSTEINE	F - 91
1is3_A_73	1is3	A	LATLACTOSE	R - 74
1qmj_A_72	1qmj	A	SEO2-MERCAPTOETHANOL	V - 85
1qmj_A_72	1qmj	A	SEO2-MERCAPTOETHANOL	I - 87
1qmj_A_72	1qmj	A	SEO2-MERCAPTOETHANOL	I - 89
1qmj_A_72	1qmj	A	SEO2-MERCAPTOETHANOL	S - 90
1slt_A_72	1slt	A	NAGN-ACETYL-D-GLUCOSAMINE	R - 73
1slt_A_72	1slt	A	CYOOXYGENS BOUND TO CYS SG	E - 86
1slt_A_72	1slt	A	CYOOXYGENS BOUND TO CYS SG	V - 87
1slt_A_72	1slt	A	CYOOXYGENS BOUND TO CYS SG	C - 88
1slt_A_72	1slt	A	CYOOXYGENS BOUND TO CYS SG	I - 89
1slt_A_72	1slt	A	CYOOXYGENS BOUND TO CYS SG	S - 90

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gzw_A_72	1gzw	A	SA1SEO BINDING SITE FOR CHAIN A	E - 86
1gzw_A_72	1gzw	A	SA1SEO BINDING SITE FOR CHAIN A	C - 88

Clusters included in this Subclass

CLUSTER: AR.9.17