ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 12.8.1

Subclass Accession number: 4289
Subclass: 12.8.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 5.2 (>75 %)  5.2.1 (>75 %)  5.2.1.8
GO : GO:0003676 (>75 %)  GO:0003677 (>75 %)  GO:0003700 (>75 %)  GO:0003755 (>50 %)  GO:0005515 (>75 %)  GO:0016563 (>75 %)  GO:0016853 (>50 %)  GO:0016859 (>50 %)
SCOP : 54533 (>75 %)  54534 (>75 %)  54535 (>75 %)  81279 (>75 %)  81296 (>75 %)

Number of loops: 4

Average sequence ID (%) : 61.3 +/- 15.7
Average RMSD (Å) : 0.275 +/- 0.050

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	FpTPXYXchphpXPhp
(φψ)-conformation:	bbpwppabaapabpbp

Pattern:	[a]	[i]	[v]	[f]	[kr]	[t]	[p]	[kp]	[y]	x	[dk]	[mpv]	[kns]	[il]	[eqt]	[akr]	[p]	[av]	[rst]	[v]	x	[lmv]	[q]	[l]	[kr]
Conservation:	0.274	0.274	0.274	1.350	0.034	0.812	1.887	-0.367	1.887	-1.338	-0.543	-1.279	-0.860	-0.242	-0.980	-1.040	1.887	-0.764	-1.159	0.274	-0.887	-0.621	0.812	0.274	0.038

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a3q_A_286	1a3q	A	286	310	AIVFRTPPYHKMKIERPVTVFLQLK	EEEEE----S-TT-SS-EEEEEEEE	bbbbbpwxxabaaxabxbxbbbbxb
1bfs_*_308	1bfs	-	308	332	AIVFKTPKYKDVNITKPASVFVQLR	EEEEE----S-TT-SS-EEEEEEEE	bbbbbxxxxabaaxabpbxbbbbxb
1ikn_A_249	1ikn	A	249	273	AIVFRTPPYADPSLQAPVRVSMQLR	EEEEE----S-TT-SS-EEEEEEEE	bbbbbxwxxaxaapabpbxbxbbxb
1my7_A_249	1my7	A	249	273	AIVFRTPPYADPSLQAPVRVSMQLR	EEEEE----S-TT--S-EEEEEEEE	bbbbbxwxxabaapabpbxbbbbxb

Clusters included in this Subclass