ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 12.16.1

Subclass Accession number: 4297
Subclass: 12.16.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.18 (>50 %)  1.18.1 (>50 %)  1.18.1.2
GO : GO:0004324 (>50 %)  GO:0005489 (>50 %)  GO:0008937 (>50 %)  GO:0016730 (>50 %)  GO:0016731 (>50 %)
SCOP : 50412 (>75 %)  52342 (>75 %)  52343 (>75 %)  52344 (>75 %)  63380 (>75 %)  63381 (>75 %)

Number of loops: 3

Average sequence ID (%) : 77.8 +/- -40.4
Average RMSD (Å) : 0.300 +/- 0.100

Consensus geometry

d (Å): 23

delta (°): 0-45

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	PVGKEMLhPcDPpAph
(φψ)-conformation:	wbeaaapppapaapbb

Pattern:	[DE]	[V]	[K]	[IL]	[T]	[G]	[P]	[V]	[G]	[K]	[E]	[M]	[L]	[LM]	[P]	[DK]	[D]	[P]	[EN]	[A]	[NT]	[IV]	[I]	[M]	[L]	[AG]	[GT]
Conservation:	-0.461	-0.266	0.415	-0.938	0.415	1.095	1.776	-0.266	1.095	0.415	0.415	0.415	-0.266	-0.756	1.776	-1.470	1.095	1.776	-1.093	-0.266	-1.130	-0.602	-0.266	0.415	-0.266	-1.246	-1.809

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fnc_*_144	1fnc	-	144	170	EVKLTGPVGKEMLMPKDPNATIIMLGT	EEEEEEEE-STT--BS-TT-EEEEEEE	xbxbbewbeaaaxxxaxaaxxbbbbbb
1ogi_A_129	1ogi	A	129	155	EVKITGPVGKEMLLPDDPEANVIMLAG	EEEEEEEE-SSS---S-TT-EEEEEEE	xbxbbewbeaaaxxxaxaaxbbxbbbb
1sm4_A_192	1sm4	A	192	218	DVKITGPVGKEMLMPKDPNATVIMLGT	EEEEEEEE-STT---S-TT-EEEEEEE	xbxbbewbeNaaxxxapaaxxbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fnc_*_144	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	T - 170

Clusters included in this Subclass