Information on SUBCLASS 13.3.1 |
Subclass Accession number: 4304
Subclass: 13.3.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 32.5 +/- 20.6 Average RMSD (Å) : 0.550 +/- 0.129 Consensus geometry
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Consensus Sequence: | XGXhPXhhXphppLXpL |
(φψ)-conformation: | bepppaaaaapaapabb |
Pattern: | x | x | [G] | [APT] | [IL] | [P] | [DPQ] | x | [IL] | [AST] | [KQS] | [IL] | [KPT] | x | [L] | [HV] | x | [IL] | [DNTY] |
Conservation: | -1.000 | -0.948 | 1.947 | -0.444 | 0.366 | 2.474 | -0.285 | -0.952 | 0.366 | -0.162 | -0.192 | 0.447 | -0.544 | -1.084 | 0.893 | -0.425 | -1.018 | 0.447 | -0.886 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ogq_A_114 | 1ogq | A | 114 | 131 | .SGAIPDFLSQIKTLVTLD | .EEE--GGGGG-TT--EEE | .bexxxaaaaaxaapabbb |
1ogq_A_136 | 1ogq | A | 137 | 155 | LSGTLPPSISSLPNLVGIT | EES---GGGGG-TT--EEE | xbebxxaaaaaxaaxabbb |
1ogq_A_257 | 1ogq | A | 257 | 274 | .YGTLPQGLTQLKFLHSLN | .EE---GGGGG-TT--EEE | .bexxxaaaaaxaaxabbb |
1ogq_A_89 | 1ogq | A | 89 | 107 | LVGPIPPAIAKLTQLHYLY | EES---GGGGG-TT-SEEE | xbexxwwaaaaxaapabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ogq_A_89 | 1ogq | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 109 |
1ogq_A_89 | 1ogq | A | NAGN-ACETYL-D-GLUCOSAMINE | H - 110 |
1ogq_A_89 | 1ogq | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 111 |
1ogq_A_257 | 1ogq | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 273 |
1ogq_A_257 | 1ogq | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 274 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ogq_A_89 | 1ogq | A | AC2NAG BINDING SITE FOR CHAIN A | H - 110 |
1ogq_A_89 | 1ogq | A | AC2NAG BINDING SITE FOR CHAIN A | T - 111 |
1ogq_A_257 | 1ogq | A | AC4NAG BINDING SITE FOR CHAIN A | N - 274 |
Clusters included in this Subclass |
CLUSTER: AR.13.25 |
CLUSTER: AR.14.9 |