ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 30.1.1

Subclass Accession number: 4345
Subclass: 30.1.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
SCOP : 88632 (>75 %) 88633 (>75 %) 88634 (>75 %)

Number of loops: 3

Average sequence ID (%) : 62.7 +/- -8.6
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry

d (Å): 19

delta (°): 90-135

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	VVhYGXWPphhpXppAphhDpPTpPDXXXXRFYT
(φψ)-conformation:	bbpllbpwbpppaaapapappppbaeaaapbpbp

Pattern:	[V]	[V]	[AG]	[Y]	[G]	x	[W]	[P]	[EH]	[FY]	[IL]	[RT]	[DP]	[DQS]	[DE]	[A]	[NT]	[AP]	[IV]	[D]	[KQ]	[P]	[T]	[EQ]	[P]	[D]	[TV]	[AS]	[AST]	[CN]	[R]	[F]	[Y]	[T]
Conservation:	-0.131	-0.131	-0.846	1.255	0.793	-1.613	3.102	1.255	-0.512	0.292	-0.575	-1.050	-0.716	-1.208	-0.257	-0.131	-0.691	-0.895	-0.361	0.793	-0.590	1.255	0.331	-0.359	1.255	0.793	-0.949	-0.821	-1.106	-0.892	0.331	0.793	1.255	0.331

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aym_2_32	1aym	2	32	65	VVGYGVWPHYLTPQDATAIDKPTQPDTSSNRFYT	EEGGG-------TTT----S--B--GGGTSS-EE	bbpUvbxwbxxxaaaxaxaxxxxbaeaaaxbxbx
1hxs_2_32	1hxs	2	32	65	VVAYGRWPEYLRDSEANPVDQPTEPDVAACRFYT	EEGGG-------GGG----S--B--GGGTSS-EE	bbplvbxwbxxpaaaxapaxpxxbweaaaxbxbx
1pvc_2_32	1pvc	2	32	65	VVAYGRWPEFIRDDEANPVDQPTEPDVATCRFYT	EEGGG-------TTT--S-S--B--GGGTSS-EE	bbplvbxwbxxxaaaxapaxxxxbaeaaaxbxbx

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1aym_2_32	1aym	2	RNARNA OBSERVED INTERACTING WITH THESE RESIDUES ON INTERIOR SURFACE OF VIRAL PROTEIN CAPSID. NON-CONSERVATIVE MUTATION OF TRP 2 38 GIVES NON-VIABLE VIRUS.	W - 38

Clusters included in this Subclass