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Information on SUBCLASS 1.2.3
Subclass Accession number: 4421
Subclass: 1.2.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 12.3 +/- 14.8
Average RMSD (Å) : 0.607 +/- 0.125

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXpXX
(φψ)-conformation: aabaa
Pattern: [adegknqrs]x[afgilvy]x[aeknqrst][dhnrsty]x[adegnpqst]xx[adegkst]
Conservation:-0.362-0.9381.072-0.5791.2841.5360.402-0.392-1.302-1.1430.422
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_7771a8i   -788798SALYKNPREWTHHHHT-HHHHHaaaaabaaaaa
1e6y_A_13871e6y   A14031413ETYEKFPTALEHHHHH-HHHHHaaaaabaaaaa
1fsl_A_51fsl   A1626EAFKANIPQYSHHHHH-HHHHHaaaaabaaaaa
1fxx_A_3271fxx   A335345KILRENPQVREHHHHH-THHHHaaaaabaaaaa
1gcv_A_41gcv   A1525QVLAKSPEAYGHHHHH-HHHHHaaaaabaaaaa
1gjn_A_41gjn   A1525GKVEADIAGHGHHHHTTHHHHHaaaaabaaaaa
1hbn_A_3671hbn   A383393EQYEEYPALLEHHHHH-HHHHHaaaaabaaaaa
1hna_*_1711hna   -172182SCLDAFPNLKDHHHHT-HHHHHaaaaabaaaaa
1hrd_A_331hrd   A3444PVVDAHPEYEEHHHHT-HHHHHaaaaabaaaaa
1jdr_A_2421jdr   A249259KEYANDQDKFFHHHHT-HHHHHaaaaabaaaaa
1ju3_A_1851ju3   A193203AAILNDVAGAAHHHHH-HHHHHaaaaabaaaaa
1kic_A_1851kic   A185195WNIYWDPASAKHHHHH-HHHHHaaaaabaaaaa
1m15_A_2881m15   A288298PKLAKDRKVLEHHHHHSHHHHHaaaaabaaaaa
1mba_*_41mba   -1525APVFANKNANGHHHHHTHHHHHaaaaabaaaaa
1msw_D_6701msw   D684694SVSVTVVAAVEHHHHH-HHHHHaaaaabaaaaa
1mwc_A_41mwc   A1525GKVEADVAGHGHHHHTTHHHHHaaaaabaaaaa
1oe8_A_1831oe8   A191201NLLASSPRLAKHHHHH-HHHHHaaaaabaaaaa
1on2_A_1071on2   A118128QYFEEDDARKKHHHHT-HHHHHaaaaabaaaaa
1q5d_A_2571q5d   A268278LNLLRSPEALEHHHHH-HHHHHaaaaabaaaaa
1qgr_A_8321qgr   A835845KLVEARPMIHEHHHHTSHHHHHaaaaabaaaaa
1r7i_A_1351r7i   A141151LANRKDQLLNSHHHHHTHHHHHaaaaabaaaaa
1ri5_A_2501ri5   A256266DEGRRNPELSKHHHHT-HHHHHaaaaabaaaaa
1vj5_A_3901vj5   A393403AELEQNLSRTFHHHHHTHHHHHaaaaabaaaaa
1vk3_A_4081vk3   A409419DLALQDTYWGTHHHTT-HHHHHaaaaabaaaaa
2gdm_*_52gdm   -1626EEFNANIPKHTHHHHTTHHHHHaaaaabaaaaa
2lhb_*_132lhb   -2434APVYSTYETSGHHHHHTHHHHHaaaaabaaaaa
5csm_A_1615csm   A167177AKFQSDIPLYTHHHHT-HHHHHaaaaabaaaaa
5rub_A_4315rub   A435445RAFESFPGDADHHHHHSHHHHHaaaaabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fsl_A_51fsl   A     NIONICOTINIC ACID F - 29
1fsl_A_51fsl   A     NIONICOTINIC ACID Y - 30
1fsl_A_51fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 33
1fsl_A_51fsl   A     NIONICOTINIC ACID I - 33
1gcv_A_41gcv   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 32
1gcv_A_41gcv   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 33
1gjn_A_41gjn   A     HYDHYDROXY GROUP L - 29
1hbn_A_3671hbn   A     GOLGLYCEROL Y - 380
1hbn_A_3671hbn   A     MGN2-METHYL-GLUTAMINE Y - 385
1hbn_A_3671hbn   A     MGMAGNESIUM ION Y - 385
1hbn_A_3671hbn   A     MGN2-METHYL-GLUTAMINE D - 394
1hbn_A_3671hbn   A     MGMAGNESIUM ION D - 394
1jdr_A_2421jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 262
1jdr_A_2421jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 266
1jdr_A_2421jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 269
1kic_A_1851kic   A     NOSINOSINE W - 185
1kic_A_1851kic   A     CACALCIUM ION N - 186
1kic_A_1851kic   A     NOSINOSINE N - 186
1mba_*_41mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 28
1mwc_A_41mwc   A     CMOCARBON MONOXIDE L - 29
1mwc_A_41mwc   A     CMOCARBON MONOXIDE L - 32
1q5d_A_2571q5d   A     EPB7,11-DIHYDROXY-8,8,10,12,16-PENTAMETHYL-3-[1-METHYL-2-(2-METHYL-THIAZOL-4-YL)VINYL]-4,17-DIOXABICYCLO[14.1.0]HEPTADECANE-5,9-DIONE D - 257
1q5d_A_2571q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 258
1q5d_A_2571q5d   A     EPB7,11-DIHYDROXY-8,8,10,12,16-PENTAMETHYL-3-[1-METHYL-2-(2-METHYL-THIAZOL-4-YL)VINYL]-4,17-DIOXABICYCLO[14.1.0]HEPTADECANE-5,9-DIONE T - 258
1q5d_A_2571q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 259
1q5d_A_2571q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 260
1q5d_A_2571q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 262
1vj5_A_3901vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA L - 406
1vk3_A_4081vk3   A     MSESELENOMETHIONINE T - 415
1vk3_A_4081vk3   A     MSESELENOMETHIONINE Y - 416
1vk3_A_4081vk3   A     MSESELENOMETHIONINE T - 419
1vk3_A_4081vk3   A     MSESELENOMETHIONINE V - 423
1vk3_A_4081vk3   A     MSESELENOMETHIONINE S - 426
1vk3_A_4081vk3   A     MSESELENOMETHIONINE V - 427
1vk3_A_4081vk3   A     MSESELENOMETHIONINE R - 428
1vk3_A_4081vk3   A     MSESELENOMETHIONINE T - 430
2gdm_*_52gdm   *     OXYOXYGEN MOLECULE F - 29
2gdm_*_52gdm   *     OXYOXYGEN MOLECULE F - 30
2gdm_*_52gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 33
2lhb_*_132lhb   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 38
2lhb_*_132lhb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 41
2lhb_*_132lhb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 42

Clusters included in this Subclass
CLUSTER: HH.0.24
CLUSTER: HH.1.30
CLUSTER: HH.1.66
CLUSTER: HH.2.235
CLUSTER: HH.2.53
CLUSTER: HH.3.64