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Information on SUBCLASS 1.2.7
Subclass Accession number: 4425
Subclass: 1.2.7 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 15.4 +/- 18.2
Average RMSD (Å) : 0.512 +/- 0.187

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hpcXp
(φψ)-conformation: aabaa
Pattern: x[afilmvwy]xx[ehnqsty][agilmy][dehknst][den][adenpqt][adegknrs]x[afilmv]xxx
Conservation:-0.446-0.289-0.303-0.6850.101-0.5880.9333.127-0.2740.200-1.0080.558-0.235-0.719-0.373
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ash_*_591ash   -7488VLCATYDDRETFNAYHHHHTTTSHHHHHHHaaaaaaabaaaaaaa
1b0b_*_591b0b   -7488NWVDNLDNAGALEGQHHHTTTT-HHHHHHHaaaaaaabaaaaaaa
1cqx_A_501cqx   A6377AYAENIEDPNSLMAVHHHHHTT-HHHHHHHaaaaaaabaaaaaaa
1dfo_A_3761dfo   A388402DVLDSINDEAVIERIHHHHTTT-HHHHHHHaaaaaaaxaaaaaaa
1h97_A_611h97   A7690HMLKEISNDAEVKKIHHHTTTT-HHHHHHHaaaaaaabaaaaaaa
1hrd_A_21hrd   A1125VEKKYADEPEFVQTVHHHHTTT-HHHHHHHaaaaaaabaaaaaaa
1it2_A_661it2   A8195EIINSMDNQEEIIKSHHHTTTT-HHHHHHHaaaaaaabaaaaaaa
1jlw_A_661jlw   A7488VEKYGAHDADLAERLHHHHTTTSHHHHHHHaaaaaaabaaaaaaa
1kyz_A_1621kyz   A162176AFEYHGTDPRFNKVFHHHHGGG-HHHHHHHaaaaaaabaaaaaaa
1mba_*_601mba   -7387EFVNNAANAGKMSAMHHHHHTT-HHHHHHHaaaaaaabaaaaaaa
1mwm_A_2191mwm   A224238DIIIHRKDNNYLKQRHHHHTTT-HHHHHHHaaaaaaabaaaaaaa
1sct_A_641sct   A7993NFVDSLDDPSRLKCVHHHHTTT-HHHHHHHaaaaaaabaaaaaaa
1sct_B_661sct   B8195NFVDALDDVERLKCVHHHHTTT-HHHHHHHaaaaaaabaaaaaaa
1uc3_A_681uc3   A8397DAVASMDDTEKMSMKHHHTTTT-HHHHHHHaaaaaaabaaaaaaa
1v93_A_2301v93   A235249KLERHQDDPKAVLEIHHHHTTT-HHHHHHHaaaaaaabaaaaaaa
2lhb_*_682lhb   -8397DAVASMDDTEKMSMKHHHHTTT-HHHHHHHaaaaaaabaaaaaaa
3sdh_A_643sdh   A7993NFIDQLDNPDDLVCVHHHHTTT-HHHHHHHaaaaaaabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 60
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 64
1ash_*_591ash   *     OXYOXYGEN MOLECULE Q - 64
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 67
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 68
1ash_*_591ash   *     OXYOXYGEN MOLECULE I - 68
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 71
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE C - 72
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 75
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 88
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 92
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 95
1ash_*_591ash   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 96
1ash_*_591ash   *     OXYOXYGEN MOLECULE H - 96
1b0b_*_591b0b   *     CYNCYANIDE ION Q - 64
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 67
1b0b_*_591b0b   *     CYNCYANIDE ION S - 67
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 68
1b0b_*_591b0b   *     CYNCYANIDE ION F - 68
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 69
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE G - 70
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 71
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 72
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE W - 75
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 91
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 92
1b0b_*_591b0b   *     HEMPROTOPORPHYRIN IX CONTAINING FE N - 95
1b0b_*_591b0b   *     CYNCYANIDE ION H - 96
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL A - 56
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 57
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL R - 59
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 60
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL A - 60
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL V - 61
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL A - 63
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL Y - 64
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 74
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL V - 77
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 78
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 78
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 80
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 81
1cqx_A_501cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL I - 81
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 84
1cqx_A_501cqx   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 84
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 85
1cqx_A_501cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 88
1h97_A_611h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 65
1h97_A_611h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 66
1h97_A_611h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 69
1h97_A_611h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 70
1h97_A_611h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 73
1h97_A_611h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 74
1h97_A_611h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 77
1h97_A_611h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 94
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 67
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 70
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 71
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 74
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 75
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 76
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 78
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 79
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 82
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 96
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 99
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 102
1it2_A_661it2   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 103
1kyz_A_1621kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID A - 162
1kyz_A_1621kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 163
1kyz_A_1621kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID F - 163
1kyz_A_1621kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID H - 166
1kyz_A_1621kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID F - 172
1kyz_A_1621kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID F - 176
1kyz_A_1621kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE M - 180
1kyz_A_1621kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID M - 180
1kyz_A_1621kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID H - 183
1kyz_A_1621kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 184
1mba_*_601mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 63
1mba_*_601mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 66
1mba_*_601mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 67
1mba_*_601mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 70
1mba_*_601mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 74
1mba_*_601mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 91
1mba_*_601mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE E - 94
1mba_*_601mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 95
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE S - 219
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE D - 223
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE I - 226
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE I - 227
1mwm_A_2191mwm   A     ADPADENOSINE-5'-DIPHOSPHATE R - 229
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 69
1sct_A_641sct   A     CMOCARBON MONOXIDE H - 69
1sct_B_661sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE H - 71
1sct_B_661sct   B     CMOCARBON MONOXIDE H - 71
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 72
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 73
1sct_A_641sct   A     CMOCARBON MONOXIDE L - 73
1sct_B_661sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE T - 74
1sct_B_661sct   B     CMOCARBON MONOXIDE L - 75
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 76
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 77
1sct_B_661sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE A - 78
1sct_B_661sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 79
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 80
1sct_B_661sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 82
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 96
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 97
1sct_B_661sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE K - 98
1sct_B_661sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 99
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 100
1sct_A_641sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 101
1sct_A_641sct   A     CMOCARBON MONOXIDE H - 101
1sct_B_661sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 102
1sct_B_661sct   B     CMOCARBON MONOXIDE H - 103
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 72
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 73
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 76
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 77
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 78
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 79
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 80
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 81
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 98
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 101
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 104
1uc3_A_681uc3   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 105
1v93_A_2301v93   A     DOXDIOXANE K - 235
1v93_A_2301v93   A     DOXDIOXANE H - 239
1v93_A_2301v93   A     DOXDIOXANE D - 242
1v93_A_2301v93   A     DOXDIOXANE K - 244
1v93_A_2301v93   A     DOXDIOXANE A - 245
1v93_A_2301v93   A     DOXDIOXANE V - 246
1v93_A_2301v93   A     DOXDIOXANE E - 248
1v93_A_2301v93   A     DOXDIOXANE I - 249
1v93_A_2301v93   A     DOXDIOXANE V - 258
1v93_A_2301v93   A     DOXDIOXANE L - 262
1v93_A_2301v93   A     DOXDIOXANE E - 263
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h97_A_611h97   A HEAHEM BINDING SITE FOR CHAIN AH - 65
1h97_A_611h97   A HEAHEM BINDING SITE FOR CHAIN AY - 66

Clusters included in this Subclass
CLUSTER: HH.4.54
CLUSTER: HH.5.30
CLUSTER: HH.6.129