Logo
Information on SUBCLASS 1.2.8
Subclass Accession number: 4426
Subclass: 1.2.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 19.3 +/- 22.6
Average RMSD (Å) : 0.513 +/- 0.154

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXpPp
(φψ)-conformation: aabaa
Pattern: xx[aclpw][adegnqt][afglvy][acflvw]xxx[lp][aegks]x[aiklmt][dehprt][adeknqr][AGILVWY][aclmtv]
Conservation:-0.530-0.419-0.562-0.062-0.722-0.666-0.111-0.620-0.2133.5770.880-0.478-0.0460.057-0.101-0.0350.052
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b79_A_291b79   A3551SVLGGLMLDNERWDDVAHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1cb8_A_3021cb8   A304320RLLVAKMIDLKHTEEWAHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1cpt_*_2871cpt   -288304EQLALAKSDPALIPRLVHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1dgf_A_1791dgf   A181197MVWDFWSLRPESLHQVSHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1dz4_A_2681dz4   A269285EHRQELIQRPERIPAACHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1e93_A_1581e93   A160176YKWDFFSHLPESLHQLTHHHHHHHT-GGGHHHHHaaaaaaaabaaaaaaaa
1eup_A_2611eup   A262278DQLALVRADPSALPNAVHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1gwe_A_1641gwe   A166182MQWDFWTNNPESAHQVTHHHHHHHT-GGGHHHHHaaaaaaaabwaaaaaaa
1h6k_A_611h6k   A7187LLCTVARLLPEKLTIYTHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1n40_A_2531n40   A254270QLRNLLHEKPELIPAGVHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1oyz_A_1051oyz   A114130STAQRCKKNPIYSPKIVHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1p80_A_2371p80   A238254TFWDYVSLQPETLHNVMHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1q5d_A_2741q5d   A275291EALELVKAEPGLMRNALHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1qwl_A_1601qwl   A162178MVWDFWSNVPESLYQVTHHHHHHHH-GGGHHHHHaaaaaaaabaaaaaaaa
1si8_A_1581si8   A160176AVWDFWSHSPESLHQVTHHHHHHHT-GGGHHHHHaaaaaaaabaaaaaaaa
1vlk_*_761vlk   -7692VMPQAENQDPEAKDHVNHHHHHHHH-TTTHHHHHaaaaaaaabaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cpt_*_2871cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 308
1dgf_A_1791dgf   A     ACTACETATE ION V - 182
1dgf_A_1791dgf   A     ACTACETATE ION W - 186
1dgf_A_1791dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 194
1dgf_A_1791dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 197
1dgf_A_1791dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 198
1dgf_A_1791dgf   A     ACTACETATE ION L - 199
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL P - 268
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 269
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL R - 271
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Q - 272
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL I - 275
1dz4_A_2681dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Q - 276
1dz4_A_2681dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 289
1eup_A_2611eup   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 282
1n40_A_2531n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 274
1oyz_A_1051oyz   A     MSESELENOMETHIONINE V - 107
1oyz_A_1051oyz   A     MSESELENOMETHIONINE R - 108
1oyz_A_1051oyz   A     MSESELENOMETHIONINE A - 111
1q5d_A_2741q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 295

Clusters included in this Subclass
CLUSTER: HH.3.135
CLUSTER: HH.3.93
CLUSTER: HH.5.18