ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.2.13

Subclass Accession number: 4431
Subclass: 1.2.13

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 18.2 +/- 21.8
Average RMSD (Å) : 0.400 +/- 0.183

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XXpPp
(φψ)-conformation:	aabaa

Pattern:	[aflv]	[fikt]	x	x	[alw]	[aiw]	[adkn]	[DEHN]	[HP]	[DENS]	x	x	[alpv]	[adnqt]	[AFLY]	[ailv]
Conservation:	-0.291	-0.779	-0.723	-0.106	-0.361	-0.647	-0.562	1.399	2.956	0.938	-0.656	-0.199	-0.474	-0.682	0.372	-0.185

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fx2_A_910	1fx2	A	910	925	STALWAAHPDLMPDAV	HHHHHHH-TTTHHHHH	aaaaaaabaaaaaaaa
1hu3_A_785	1hu3	A	795	810	VFEKAIDEPSFSVAYA	HHHHHHH-GGGHHHHH	aaaaaaabaaaaaaaa
1hw1_A_83	1hw1	A	83	98	LETLARLDHESVPQLI	HHHHHHH-GGGHHHHH	aaaaaaabaaaaaaaa
1lp1_A_24	1lp1	A	30	45	FIFSLWDDPSQSANLL	HHHHHHH-GGGHHHHH	aaaaaaabaaaaaaaa
1lp1_B_24	1lp1	B	30	45	FIQSLKDDPSQSANLL	HHHHHHH-TTSHHHHH	aaaaaaabaaaaaaaa
1psz_A_144	1psz	A	155	170	AKQLSAKDPNNKEFYE	HHHHHHH-GGGHHHHH	aaaaaaabaaaaaaaa
1qsa_A_185	1qsa	A	190	205	AIISLANNPNTVLTFA	HHHHHHH-GGGHHHHH	aaaaaaabaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hu3_A_785	1hu3	A	MSESELENOMETHIONINE	V - 791
1hu3_A_785	1hu3	A	MSESELENOMETHIONINE	V - 795
1hu3_A_785	1hu3	A	MSESELENOMETHIONINE	V - 807
1hu3_A_785	1hu3	A	MSESELENOMETHIONINE	A - 808
1hu3_A_785	1hu3	A	MSESELENOMETHIONINE	Y - 809
1hu3_A_785	1hu3	A	MSESELENOMETHIONINE	A - 810
1lp1_B_24	1lp1	B	MGMAGNESIUM ION	E - 24
1lp1_B_24	1lp1	B	MGMAGNESIUM ION	E - 25
1qsa_A_185	1qsa	A	GOLGLYCEROL	I - 187

Clusters included in this Subclass

CLUSTER: HH.4.90