ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.2.14

Subclass Accession number: 4432
Subclass: 1.2.14

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 7

Average sequence ID (%) : 15.6 +/- 18.3
Average RMSD (Å) : 0.757 +/- 0.127

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	LXpXX
(φψ)-conformation:	aabaa

Pattern:	x	x	x	x	[AL]	x	[DENS]	[DEGPQ]	[dgrst]	x	[aklm]
Conservation:	-0.583	-0.445	-0.490	-0.038	2.080	-0.976	1.544	0.394	-0.435	-1.101	0.049

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fm0_D_28	1fm0	D	33	43	QHMAAQSDRWA	HHHHTT-HHHH	aaaaaabaaaa
1jl6_A_53	1jl6	A	69	79	AVSHLGDEGKM	HHHTTTSHHHH	aaaaaabaaaa
1lm8_C_33	1lm8	C	33	43	REHALTSGTIK	HHHHTTSHHHH	aaaaaaxaaaa
1n93_X_53	1n93	X	56	66	NAVALLDQSRR	HHHHTTSHHHH	aaaaaaxaaaa
1nrl_A_315	1nrl	A	315	325	FQQLLLEPMLK	HHHHTTSHHHH	aaaaaaxaaaa
1sct_A_64	1sct	A	80	90	FVDSLDDPSRL	HHHTTT-HHHH	aaaaaabaaaa
3sdh_A_64	3sdh	A	80	90	FIDQLDNPDDL	HHHTTT-HHHH	aaaaaabaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 58
1jl6_A_53	1jl6	A	CNCYANIDE GROUP	L - 58
1jl6_A_53	1jl6	A	CNCYANIDE GROUP	G - 59
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 61
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 62
1jl6_A_53	1jl6	A	CNCYANIDE GROUP	V - 62
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 63
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 65
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 66
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 83
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 86
1jl6_A_53	1jl6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 89
1nrl_A_315	1nrl	A	SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER	M - 323
1nrl_A_315	1nrl	A	SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER	L - 324
1nrl_A_315	1nrl	A	SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER	H - 327
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 69
1sct_A_64	1sct	A	CMOCARBON MONOXIDE	H - 69
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	T - 72
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 73
1sct_A_64	1sct	A	CMOCARBON MONOXIDE	L - 73
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 76
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 77
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 80
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 96
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 97
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	N - 100
1sct_A_64	1sct	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 101
1sct_A_64	1sct	A	CMOCARBON MONOXIDE	H - 101

Clusters included in this Subclass

CLUSTER: HH.3.63