Information on SUBCLASS 1.2.17 |
Subclass Accession number: 4435
Subclass: 1.2.17 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 13.9 +/- 15.7 Average RMSD (Å) : 0.467 +/- 0.225 Consensus geometry
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Consensus Sequence: | XpXPp |
(φψ)-conformation: | aabaa |
Pattern: | [alv] | x | x | [ekst] | x | [LP] | [DEPRS] | x | [AFLV] | [akr] | x | [AFLV] |
Conservation: | 0.016 | -1.018 | -0.547 | -0.176 | -0.438 | 2.928 | 0.108 | -0.339 | 0.099 | -0.067 | -0.816 | 0.251 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8h_*_423 | 1a8h | - | 426 | 437 | LFKKEPEEARAV | HHHH-HHHHHHH | aaaabaaaaaaa |
1cvl_*_237 | 1cvl | - | 237 | 248 | ANVTDPSTLALL | HHHH-THHHHHH | aaaabaaaaaaa |
1ll2_A_193 | 1ll2 | A | 193 | 204 | SIYSYLPAFKAF | HHHHTHHHHHHH | aaaabaaaaaaa |
1lt8_A_48 | 1lt8 | A | 48 | 59 | AAVEHPEAVRQL | HHHH-HHHHHHH | aaaabaaaaaaa |
1oyj_A_187 | 1oyj | A | 187 | 198 | VEEVAPRLAAWA | HHHH-HHHHHHH | aaaabaaaaaaa |
1q7z_A_38 | 1q7z | A | 38 | 49 | LNIKAPDVVLKV | HHHH-HHHHHHH | aaaabaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1cvl_*_237 | 1cvl | * | CACALCIUM ION | D - 241 |
1cvl_*_237 | 1cvl | * | CACALCIUM ION | S - 243 |
1cvl_*_237 | 1cvl | * | CACALCIUM ION | T - 244 |
1oyj_A_187 | 1oyj | A | GOLGLYCEROL | V - 187 |
1oyj_A_187 | 1oyj | A | GOLGLYCEROL | E - 188 |
1oyj_A_187 | 1oyj | A | MGMAGNESIUM ION | E - 189 |
1oyj_A_187 | 1oyj | A | MGMAGNESIUM ION | V - 190 |
1oyj_A_187 | 1oyj | A | MGMAGNESIUM ION | P - 192 |
1oyj_A_187 | 1oyj | A | MGMAGNESIUM ION | R - 193 |
1oyj_A_187 | 1oyj | A | GOLGLYCEROL | L - 194 |
1oyj_A_187 | 1oyj | A | GOLGLYCEROL | A - 195 |
1oyj_A_187 | 1oyj | A | GOLGLYCEROL | A - 196 |
1oyj_A_187 | 1oyj | A | GOLGLYCEROL | A - 198 |
1oyj_A_187 | 1oyj | A | GOLGLYCEROL | R - 199 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1cvl_*_237 | 1cvl | * | CACA BINDING SITE. | D - 241 |
Clusters included in this Subclass |
CLUSTER: HH.1.71 |
CLUSTER: HH.2.226 |