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Information on SUBCLASS 1.2.17
Subclass Accession number: 4435
Subclass: 1.2.17 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 13.9 +/- 15.7
Average RMSD (Å) : 0.467 +/- 0.225

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXPp
(φψ)-conformation: aabaa
Pattern: [alv]xx[ekst]x[LP][DEPRS]x[AFLV][akr]x[AFLV]
Conservation:0.016-1.018-0.547-0.176-0.4382.9280.108-0.3390.099-0.067-0.8160.251
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8h_*_4231a8h   -426437LFKKEPEEARAVHHHH-HHHHHHHaaaabaaaaaaa
1cvl_*_2371cvl   -237248ANVTDPSTLALLHHHH-THHHHHHaaaabaaaaaaa
1ll2_A_1931ll2   A193204SIYSYLPAFKAFHHHHTHHHHHHHaaaabaaaaaaa
1lt8_A_481lt8   A4859AAVEHPEAVRQLHHHH-HHHHHHHaaaabaaaaaaa
1oyj_A_1871oyj   A187198VEEVAPRLAAWAHHHH-HHHHHHHaaaabaaaaaaa
1q7z_A_381q7z   A3849LNIKAPDVVLKVHHHH-HHHHHHHaaaabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cvl_*_2371cvl   *     CACALCIUM ION D - 241
1cvl_*_2371cvl   *     CACALCIUM ION S - 243
1cvl_*_2371cvl   *     CACALCIUM ION T - 244
1oyj_A_1871oyj   A     GOLGLYCEROL V - 187
1oyj_A_1871oyj   A     GOLGLYCEROL E - 188
1oyj_A_1871oyj   A     MGMAGNESIUM ION E - 189
1oyj_A_1871oyj   A     MGMAGNESIUM ION V - 190
1oyj_A_1871oyj   A     MGMAGNESIUM ION P - 192
1oyj_A_1871oyj   A     MGMAGNESIUM ION R - 193
1oyj_A_1871oyj   A     GOLGLYCEROL L - 194
1oyj_A_1871oyj   A     GOLGLYCEROL A - 195
1oyj_A_1871oyj   A     GOLGLYCEROL A - 196
1oyj_A_1871oyj   A     GOLGLYCEROL A - 198
1oyj_A_1871oyj   A     GOLGLYCEROL R - 199
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1cvl_*_2371cvl   * CACA BINDING SITE.D - 241

Clusters included in this Subclass
CLUSTER: HH.1.71
CLUSTER: HH.2.226