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Information on SUBCLASS 1.3.16
Subclass Accession number: 4477
Subclass: 1.3.16 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 12.8 +/- 14.3
Average RMSD (Å) : 0.267 +/- 0.058

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XpGXX
(φψ)-conformation: aalaa
Pattern: x[KL][HNP]x[KLV][NQ][G][AKM][FTW][DHT][ENS]x[KLM]
Conservation:-0.642-0.1670.029-0.717-0.5670.8132.939-0.4930.104-0.2690.179-1.015-0.194
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g8k_A_2471g8k   A247259WLPNLQGATTSKKHHHHHHTTTHHHHaaaaaavaaaaaa
1h2b_A_551h2b   A5769DLHLVQGMWHELLHHHHHHTTTHHHHaaaaaavaaaaaa
1nhd_A_1321nhd   A139151MKNYKNGKFDNDMHHHHHTTTTHHHHaaaaaavaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h2b_A_551h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) H - 55
1h2b_A_551h2b   A     ZNZINC ION H - 55
1h2b_A_551h2b   A     OCAOCTANOIC ACID (CAPRYLIC ACID) T - 56
1h2b_A_551h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) T - 56
1h2b_A_551h2b   A     ZNZINC ION T - 56
1h2b_A_551h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) D - 57
1h2b_A_551h2b   A     ZNZINC ION D - 57
1h2b_A_551h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) L - 58
1h2b_A_551h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) H - 59
1h2b_A_551h2b   A     OCAOCTANOIC ACID (CAPRYLIC ACID) W - 65
1h2b_A_551h2b   A     OCAOCTANOIC ACID (CAPRYLIC ACID) L - 69
1nhd_A_1321nhd   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 132
1nhd_A_1321nhd   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 134
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h2b_A_551h2b   A OC1SUBSTRATE BINDING SITE FOR CHAIN AT - 56

Clusters included in this Subclass
CLUSTER: HH.4.374