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Information on SUBCLASS 1.5.3
Subclass Accession number: 4492
Subclass: 1.5.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 6.2 +/- 12.4
Average RMSD (Å) : 0.500 +/- 0.100

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 0-45 rho (°): 0-45
Consensus Sequence: hXphX
(φψ)-conformation: aaNaa
Pattern: [ERS]x[GKR][ITY][IKV][AGN]xx[IKL][VY][AEK][HRT][AFI]x[HQY][ES]
Conservation:0.020-0.3620.020-0.743-0.5520.020-0.151-0.743-0.9341.3220.0200.020-0.743-1.3151.9272.195
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h0o_A_1221h0o   A138153SDGIVNENLVERFSQEHHHHHHHHHHHTHHHHaaaaaaaaaaaIaaaa
1o7q_A_1951o7q   A202217RMKTIGEHIVAHIQHEHHHHHHHHHHHTHHHHaaaaaaaaaaaNaaaa
1uby_*_2041uby   -204219EERYKAIVKYKTAFYSHHHHHHHHHHHTHHHHaaaaaaaaaaaNaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h0o_A_1221h0o   A     COCOBALT (II) ION D - 139
1h0o_A_1221h0o   A     COCOBALT (II) ION V - 142
1o7q_A_1951o7q   A     UDPURIDINE-5'-DIPHOSPHATE W - 195
1o7q_A_1951o7q   A     UDPURIDINE-5'-DIPHOSPHATE Q - 196
1o7q_A_1951o7q   A     UDPURIDINE-5'-DIPHOSPHATE D - 197
1o7q_A_1951o7q   A     UDPURIDINE-5'-DIPHOSPHATE I - 198
1o7q_A_1951o7q   A     UDPURIDINE-5'-DIPHOSPHATE S - 199
1o7q_A_1951o7q   A     UDPURIDINE-5'-DIPHOSPHATE M - 200
1o7q_A_1951o7q   A     UDPURIDINE-5'-DIPHOSPHATE M - 201
1o7q_A_1951o7q   A     MNMANGANESE (II) ION R - 202
1o7q_A_1951o7q   A     UDPURIDINE-5'-DIPHOSPHATE R - 202
1uby_*_2041uby   *     DMADIMETHYLALLYL DIPHOSPHATE K - 214
1uby_*_2041uby   *     MGMAGNESIUM ION K - 214
1uby_*_2041uby   *     DMADIMETHYLALLYL DIPHOSPHATE T - 215
1uby_*_2041uby   *     DMADIMETHYLALLYL DIPHOSPHATE Y - 218
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7q_A_1951o7q   A AC6UDP BINDING SITE FOR CHAIN AW - 195
1o7q_A_1951o7q   A AC7UDP BINDING SITE FOR CHAIN AD - 197
1o7q_A_1951o7q   A AC6UDP BINDING SITE FOR CHAIN AI - 198
1o7q_A_1951o7q   A AC6UDP BINDING SITE FOR CHAIN AS - 199
1o7q_A_1951o7q   A AC6UDP BINDING SITE FOR CHAIN AR - 202

Clusters included in this Subclass
CLUSTER: HH.0.53