ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.13

Subclass Accession number: 4513
Subclass: 2.1.13

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 44.8 +/- 25.2
Average RMSD (Å) : 0.212 +/- 0.083

Consensus geometry

d (Å): 15

delta (°): 0-45

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	NhVNWX
(φψ)-conformation:	aappaa

Pattern:	[KR]	[AGPV]	[DEKS]	[FHY]	[ALV]	[DEKN]	[ADGN]	[FILW]	[W]	[NS]	[ILV]	[IV]	[DN]	[W]	[ADES]	x	[AIV]	[AENQT]
Conservation:	0.171	-0.807	-0.449	0.302	-0.549	-0.440	-0.759	-0.535	2.514	0.265	-0.093	0.139	0.308	2.514	-0.638	-0.912	-0.343	-0.689

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b06_A_184	1b06	A	184	201	RGDYLNAWWNVVNWDDAE	HHHHHHHHGGGB-HHHHH	aaaaaaaaaaaxxaaaaa
1dt0_A_170	1dt0	A	170	187	RPKYVEAFWNLVNWAFVA	HHHHHHHHTTTB-HHHHH	aaaaaaaaaaapbaaaaa
1gv3_A_214	1gv3	A	214	231	RPEYLNNWWNVVNWSEIN	HHHHHHHGGGGB-HHHHH	aaaaaaaaaaaxxaaaaa
1ids_A_174	1ids	A	174	191	KVDFAKAFWNVVNWADVQ	HHHHHHHGGGSB-HHHHH	aaaaaaaaaaaxxaaaaa
1kkc_A_188	1kkc	A	188	205	KASYAKGIWNVINWAEAE	HHHHHHHHGGGBBHHHHH	aaaaaaaaaaaxxaaaaa
1p7g_A_190	1p7g	A	190	207	RGSYVDNWWNVVNWDDVE	HHHHHHHHGGG--HHHHH	aaaaaaaaaaaxxaaaaa
1pl4_A_173	1pl4	A	173	190	RPDYLKAIWNVINWENVT	HHHHHHHHGGGB-HHHHH	aaaaaaaaaaaxxaaaaa
1qnn_A_171	1qnn	A	171	188	RADHLKDLWSIVDWDIVE	HHHHHHHHGGGB-HHHHH	aaaaaaaaaaaxxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1p7g_A_190	1p7g	A	MSESELENOMETHIONINE	Y - 193
1p7g_A_190	1p7g	A	MSESELENOMETHIONINE	W - 197
1p7g_A_190	1p7g	A	MSESELENOMETHIONINE	V - 200
1p7g_A_190	1p7g	A	MSESELENOMETHIONINE	V - 201
1p7g_A_190	1p7g	A	MSESELENOMETHIONINE	N - 202
1p7g_A_190	1p7g	A	MSESELENOMETHIONINE	D - 205

Clusters included in this Subclass

CLUSTER: HH.5.76