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Information on SUBCLASS 2.1.16
Subclass Accession number: 4516
Subclass: 2.1.16 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 9.2 +/- 11.2
Average RMSD (Å) : 0.850 +/- 0.160

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XhhcXp
(φψ)-conformation: aappaa
Pattern: x[aflmt]xx[fgklmv][fglmv][DGN]x[DEGKN]x[lmvw]x
Conservation:-1.2140.391-0.375-0.805-0.429-0.2062.305-0.3471.362-0.1860.426-0.924
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f7u_A_1941f7u   A202213GFERYGNEEALVHHHHH--HHHHHaaaaapbaaaaa
1j79_A_2001j79   A200211PQHLMFNRNHMLHHHHH--HHHHHaaaaabbaaaaa
1jb0_A_6701jb0   A687698LMFLFSGRGYWQHHHHHS-HHHHHaaaaabbaaaaa
1je6_A_481je6   A4960WAEDVLGAETWDHHHHHS-HHHHHaaaaaxxaaaaa
1jeb_B_51jeb   B1324GLWGKVNADEVGHHHHHS-HHHHHaaaaabxaaaaa
1jkv_A_971jkv   A99110TTMAGMDPEHSLHHHHHS-HHHHHaaaaaxxaaaaa
1kek_A_1881kek   A190201DMASLVNQKALAHHHHHS-HHHHHaaaaaxxaaaaa
1kfi_A_2071kfi   A212223LMQKLFDFDLLKHHHHHS-HHHHHaaaaabxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j79_A_2001j79   A     NCDN-CARBAMOYL-L-ASPARTATE N - 206
1j79_A_2001j79   A     NCDN-CARBAMOYL-L-ASPARTATE N - 208
1j79_A_2001j79   A     NCDN-CARBAMOYL-L-ASPARTATE H - 209
1j79_A_2001j79   A     NCDN-CARBAMOYL-L-ASPARTATE M - 210
1j79_A_2001j79   A     NCDN-CARBAMOYL-L-ASPARTATE L - 211
1jb0_A_6701jb0   A     CACALCIUM ION S - 670
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A S - 670
1jb0_A_6701jb0   A     CACALCIUM ION A - 671
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A A - 671
1jb0_A_6701jb0   A     CACALCIUM ION Y - 672
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A Y - 672
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A G - 673
1jb0_A_6701jb0   A     CACALCIUM ION L - 674
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A L - 674
1jb0_A_6701jb0   A     CACALCIUM ION L - 675
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A L - 675
1jb0_A_6701jb0   A     BCRBETA-CAROTENE L - 675
1jb0_A_6701jb0   A     CACALCIUM ION F - 676
1jb0_A_6701jb0   A     CL2BETA CHLOROPHYLL A F - 676
1jb0_A_6701jb0   A     CACALCIUM ION L - 677
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A L - 677
1jb0_A_6701jb0   A     BCRBETA-CAROTENE L - 677
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A G - 678
1jb0_A_6701jb0   A     BCRBETA-CAROTENE G - 678
1jb0_A_6701jb0   A     CL2BETA CHLOROPHYLL A A - 679
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A A - 679
1jb0_A_6701jb0   A     BCRBETA-CAROTENE A - 679
1jb0_A_6701jb0   A     CACALCIUM ION H - 680
1jb0_A_6701jb0   A     CL2BETA CHLOROPHYLL A H - 680
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A H - 680
1jb0_A_6701jb0   A     CACALCIUM ION F - 681
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A F - 681
1jb0_A_6701jb0   A     BCRBETA-CAROTENE F - 681
1jb0_A_6701jb0   A     CACALCIUM ION I - 682
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A I - 682
1jb0_A_6701jb0   A     BCRBETA-CAROTENE I - 682
1jb0_A_6701jb0   A     CACALCIUM ION W - 683
1jb0_A_6701jb0   A     CL2BETA CHLOROPHYLL A W - 683
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A W - 683
1jb0_A_6701jb0   A     CACALCIUM ION A - 684
1jb0_A_6701jb0   A     CL2BETA CHLOROPHYLL A A - 684
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A A - 684
1jb0_A_6701jb0   A     CACALCIUM ION F - 685
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A F - 685
1jb0_A_6701jb0   A     CACALCIUM ION S - 686
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A S - 686
1jb0_A_6701jb0   A     CACALCIUM ION L - 687
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A L - 687
1jb0_A_6701jb0   A     CACALCIUM ION M - 688
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A M - 688
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE M - 688
1jb0_A_6701jb0   A     BCRBETA-CAROTENE M - 688
1jb0_A_6701jb0   A     CACALCIUM ION F - 689
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A F - 689
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE F - 689
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE L - 690
1jb0_A_6701jb0   A     CACALCIUM ION F - 691
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A F - 691
1jb0_A_6701jb0   A     CACALCIUM ION S - 692
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A S - 692
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE S - 692
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE G - 693
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE R - 694
1jb0_A_6701jb0   A     CACALCIUM ION Y - 696
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A Y - 696
1jb0_A_6701jb0   A     CACALCIUM ION W - 697
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A W - 697
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE W - 697
1jb0_A_6701jb0   A     BCRBETA-CAROTENE W - 697
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE Q - 698
1jb0_A_6701jb0   A     CACALCIUM ION L - 700
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A L - 700
1jb0_A_6701jb0   A     BCRBETA-CAROTENE L - 700
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A I - 701
1jb0_A_6701jb0   A     PQNPHYLLOQUINONE I - 701
1jb0_A_6701jb0   A     BCRBETA-CAROTENE I - 701
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A S - 703
1jb0_A_6701jb0   A     CACALCIUM ION I - 704
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A I - 704
1jb0_A_6701jb0   A     BCRBETA-CAROTENE I - 704
1jb0_A_6701jb0   A     CACALCIUM ION V - 705
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A V - 705
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A W - 706
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A A - 707
1jb0_A_6701jb0   A     CACALCIUM ION H - 708
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A H - 708
1jb0_A_6701jb0   A     CACALCIUM ION K - 710
1jb0_A_6701jb0   A     CL1ALPHA CHLOROPHYLL A K - 710
1jeb_B_51jeb   B     CMOCARBON MONOXIDE L - 28
1jeb_B_51jeb   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 31
1jeb_B_51jeb   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 32

Clusters included in this Subclass
CLUSTER: HH.1.49