Information on SUBCLASS 8.3.1 |
Subclass Accession number: 453
Subclass: 8.3.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.1 (>75 %) 1.1 (>75 %) 1.1.1 (>75 %) 1.1.1 (>75 %) 1.1.1.11.1.1.13.2 (>75 %) 3.2.1 (>75 %) 3.2.1.113 (>75 %) GO : GO:0004022 (>50 %) GO:0004022 (>75 %) GO:0004553 (>75 %) GO:0005509 (>75 %) GO:0008270 (>50 %) GO:0008270 (>75 %) GO:0015923 (>75 %) GO:0016614 (>50 %) GO:0016614 (>75 %) GO:0016616 (>50 %) GO:0016616 (>75 %) GO:0016798 (>75 %) GO:0046914 (>50 %) GO:0046914 (>75 %) SCOP : 48207 (>75 %) 48225 (>75 %) 48226 (>75 %) 50128 (>75 %) 50128 (>75 %) 50129 (>75 %) 50129 (>75 %) 50136 (>75 %) 50136 (>75 %) 51734 (>75 %) 51734 (>75 %) 51735 (>75 %) 51735 (>75 %) 51736 (>75 %) 51736 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 15.6 +/- 17.9 Average RMSD (Å) : 1.250 +/- 0.705 Consensus geometry
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Consensus Sequence: | pXpppcXhXEXh |
(φψ)-conformation: | aapaalbppabb |
Pattern: | x | x | x | x | x | [FLV] | [AGT] | [AFKL] | [EG] | x | [ASTV] | x | [GLT] | [CQ] | x | x | x | [DY] | [HKN] | x | [NST] | x | [DSTV] | [GK] | x | [AGL] | [NP] | [DE] | x | [FLVW] |
Conservation: | -0.071 | -0.465 | -0.066 | -1.225 | -0.133 | 0.418 | 0.168 | -1.108 | 0.512 | -0.444 | -0.172 | -0.709 | -0.704 | 2.289 | -0.465 | -0.933 | -0.348 | 1.432 | 1.003 | -1.050 | 0.874 | -1.342 | -0.640 | 0.512 | -0.079 | -0.503 | 1.819 | 2.477 | -0.874 | -0.172 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ayx_*_424 | 1ayx | - | 429 | 458 | VADNLVTFGDSFLQVILDHINDDGSLNEQL | HHHHHHHHHHHHHHHHHHHS-TTS---SEE | aaaaaaaaaaaaaaaaaaaxxaavxbxabb |
1dl2_A_372 | 1dl2 | A | 372 | 401 | KSDWDLAKGITDTCYQMYKQSSSGLAPEIV | HHHHHHHHHHHHHHHHHHHTSTTS---SEE | aaaaaaaaaaaaaaaaaaaaxaavbxxabb |
1kre_A_348 | 1kre | A | 348 | 377 | QDFIDFGLELVDGCEATYNSTLTKIGPDSW | HHHHHHHHHHHHHHHHHHHTSSSS---SEE | aaaaaaaaaaaaaaaaaaaaxaavbxxabb |
1nxc_A_496 | 1nxc | A | 497 | 526 | QHYLELGAEIARTCHESYNRTYVKLGPEAF | HHHHHHHHHHHHHHHHHHHTSSSSS--SEE | aaaaaaaaaaaaaaaaaaaabaavbxxabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ayx_*_424 | 1ayx | * | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | E - 456 |
1kre_A_348 | 1kre | A | MANALPHA-D-MANNOSE | Q - 348 |
1kre_A_348 | 1kre | A | MANALPHA-D-MANNOSE | I - 351 |
1kre_A_348 | 1kre | A | MANALPHA-D-MANNOSE | D - 352 |
1kre_A_348 | 1kre | A | MANALPHA-D-MANNOSE | L - 355 |
1kre_A_348 | 1kre | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 358 |
1kre_A_348 | 1kre | A | NAGN-ACETYL-D-GLUCOSAMINE | D - 359 |
1kre_A_348 | 1kre | A | MANALPHA-D-MANNOSE | D - 359 |
1kre_A_348 | 1kre | A | NAGN-ACETYL-D-GLUCOSAMINE | G - 360 |
1kre_A_348 | 1kre | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 362 |
1kre_A_348 | 1kre | A | NAGN-ACETYL-D-GLUCOSAMINE | A - 363 |
1kre_A_348 | 1kre | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 366 |
1nxc_A_496 | 1nxc | A | NAGN-ACETYL-D-GLUCOSAMINE | H - 511 |
1nxc_A_496 | 1nxc | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 512 |
1nxc_A_496 | 1nxc | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 515 |
1nxc_A_496 | 1nxc | A | NAGN-ACETYL-D-GLUCOSAMINE | R - 516 |
1nxc_A_496 | 1nxc | A | NAGN-ACETYL-D-GLUCOSAMINE | K - 520 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ayx_*_424 | 1ayx | * | NULENZYME ACTIVE SITE AND TWO CATALYTIC CARBOXYLATES. | E - 456 |
Clusters included in this Subclass |
CLUSTER: HE.8.12 |