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Information on SUBCLASS 2.1.48
Subclass Accession number: 4548
Subclass: 2.1.48 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 48370 (>50 %)  48371 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 11.9 +/- 12.0
Average RMSD (Å) : 0.833 +/- 0.306

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXhXXp
(φψ)-conformation: aappaa
Pattern: x[LT][EGS]x[LM][IVY][ALM]x[L][DPQ][LTV][CIM][DNP][FPT][ET]x[KV][DK][ADR][FKV][AIL][ANQ][ILW][FI][KNS][EHN]x[IL]
Conservation:-1.4840.290-0.318-0.7421.5840.318-0.106-1.5902.3330.000-0.1060.2120.106-1.0600.700-1.2720.1551.153-0.954-1.166-0.212-0.530-0.1061.4270.3180.742-1.1661.470
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h6k_A_3871h6k   A394421ATEMLYMRLDTMNTTCVDRFINWFSHHLHHHHHHHTGGGB-HHHHHHHHHHHHHHHaaaaaaaaaaaxxaaaaaaaaaaaaaaa
1k3y_A_861k3y   A101128DLGEMILLLPVCPPEEKDAKLALIKEKIHHHHHHHHGGGS-HHHHHHHHHHHHHHHaaaaaaaaaaaxwaaaaaaaaaaaaaaa
1upk_A_791upk   A79106LLSTLVADLQLIDFEGKKDVAQIFNNILHHHHHHHTGGGS-HHHHHHHHHHHHHHHaaaaaaaaaaaxxaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k3y_A_861k3y   A     GOLGLYCEROL I - 96
1k3y_A_861k3y   A     GTXS-HEXYLGLUTATHIONE E - 97
1k3y_A_861k3y   A     GOLGLYCEROL E - 97
1k3y_A_861k3y   A     GOLGLYCEROL I - 99
1k3y_A_861k3y   A     GOLGLYCEROL A - 100
1k3y_A_861k3y   A     GTXS-HEXYLGLUTATHIONE D - 101
1k3y_A_861k3y   A     GOLGLYCEROL D - 101
1k3y_A_861k3y   A     GOLGLYCEROL E - 104
1k3y_A_861k3y   A     GTXS-HEXYLGLUTATHIONE L - 107
1k3y_A_861k3y   A     GTXS-HEXYLGLUTATHIONE L - 108
1k3y_A_861k3y   A     GTXS-HEXYLGLUTATHIONE P - 110
1k3y_A_861k3y   A     GTXS-HEXYLGLUTATHIONE V - 111
1k3y_A_861k3y   A     GTXS-HEXYLGLUTATHIONE K - 127
1upk_A_791upk   A     MSESELENOMETHIONINE L - 79
1upk_A_791upk   A     MSESELENOMETHIONINE S - 81
1upk_A_791upk   A     MSESELENOMETHIONINE T - 82
1upk_A_791upk   A     MSESELENOMETHIONINE L - 83
1upk_A_791upk   A     MSESELENOMETHIONINE V - 84
1upk_A_791upk   A     MSESELENOMETHIONINE A - 85
1upk_A_791upk   A     MSESELENOMETHIONINE D - 86
1upk_A_791upk   A     MSESELENOMETHIONINE L - 87
1upk_A_791upk   A     MSESELENOMETHIONINE L - 89
1upk_A_791upk   A     MSESELENOMETHIONINE I - 90
1upk_A_791upk   A     MSESELENOMETHIONINE K - 95
1upk_A_791upk   A     MSESELENOMETHIONINE V - 98
1upk_A_791upk   A     MSESELENOMETHIONINE A - 99
1upk_A_791upk   A     MSESELENOMETHIONINE Q - 100
1upk_A_791upk   A     MSESELENOMETHIONINE I - 101
1upk_A_791upk   A     MSESELENOMETHIONINE F - 102
1upk_A_791upk   A     MSESELENOMETHIONINE N - 103
1upk_A_791upk   A     MSESELENOMETHIONINE L - 106

Clusters included in this Subclass
CLUSTER: HH.5.217