Information on SUBCLASS 2.2.8 |
Subclass Accession number: 4569
Subclass: 2.2.8 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 15 Average sequence ID (%) : 13.6 +/- 15.9 Average RMSD (Å) : 0.567 +/- 0.072 Consensus geometry
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Consensus Sequence: | XXXXXX |
(φψ)-conformation: | aalpaa |
Pattern: | x | x | x | x | x | x | x | x | [degnqr] | x | x | x | x | x | x | x | [filmvy] |
Conservation: | 0.081 | -1.000 | -0.435 | -0.155 | -0.418 | -0.026 | -0.135 | -0.920 | 0.988 | -0.075 | -0.860 | 0.082 | -0.825 | 1.757 | -0.663 | -0.183 | 2.787 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bpy_A_13 | 1bpy | A | 23 | 39 | ANFEKNVSQAIHKYNAY | HHHHHHTT--HHHHHHH | aaaaaaaavbaaaaaaa |
1cm7_A_299 | 1cm7 | A | 306 | 322 | ALLLRYSLDADDAACAI | HHHHHHTS--HHHHHHH | aaaaaaaalbaaaaaaa |
1d8w_A_365 | 1d8w | A | 367 | 383 | ELRKLEAPGDYTARLAL | HHHHHHTTT-HHHHHHH | aaaaaaaavxaaaaaaa |
1dys_A_15 | 1dys | A | 24 | 40 | TRQAFLSRGDQTNAAKV | HHHHHHTTT-HHHHHHH | aaaaaaaavxaaaaaaa |
1iwp_G_101 | 1iwp | G | 108 | 124 | ADELEHTWHATVNAAFV | HHHHHHTS--HHHHHHH | aaaaaaaalxaaaaaaa |
1iwp_G_51 | 1iwp | G | 57 | 73 | QAQIAEQMQRHAVARNF | HHHHHHTTT-HHHHHHH | aaaaaaaavxaaaaaaa |
1k75_A_397 | 1k75 | A | 407 | 423 | IETLAAAERLTAHKNAV | HHHHHHHTT-HHHHHHH | aaaaaaaalbaaaaaaa |
1oy3_D_130 | 1oy3 | D | 130 | 146 | ALHLACRVRAHTCACVL | HHHHHTTTT-HHHHHHH | aaaaaaaalxaaaaaaa |
1qjb_A_165 | 1qjb | A | 175 | 191 | SVFYYEILNSPEKACSL | HHHHHHTS--HHHHHHH | aaaaaaaalbaaaaaaa |
1us7_B_184 | 1us7 | B | 193 | 209 | WCIDLEVEEKCALMEQV | HHHHHHHTT-HHHHHHH | aaaaaaaavxaaaaaaa |
1utc_A_334 | 1utc | A | 335 | 351 | IPYITNVLQNPDLALRM | HHHHHHTT--HHHHHHH | aaaaaaaavbaaaaaaa |
1xaa_*_288 | 1xaa | - | 295 | 311 | AMMLEHAFGLVELARKV | HHHHHHTT--HHHHHHH | aaaaaaaavxaaaaaaa |
1xad_*_288 | 1xad | - | 295 | 311 | AMMLEHAFGLVELARKV | HHHHHHTS--HHHHHHH | aaaaaaaavxaaaaaaa |
3fap_B_112 | 3fap | B | 123 | 139 | ASRLYFGERNVKGMFEV | HHHHHHTT--HHHHHHH | aaaaaaaalbaaaaaaa |
3ygs_P_70 | 3ygs | P | 74 | 90 | FISCLEDTGQDMLASFL | HHHHHHTTT-HHHHHHH | aaaaaaaavxaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bpy_A_13 | 1bpy | A | DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | R - 40 |
1d8w_A_365 | 1d8w | A | MSESELENOMETHIONINE | E - 372 |
1d8w_A_365 | 1d8w | A | MSESELENOMETHIONINE | Y - 377 |
1d8w_A_365 | 1d8w | A | MSESELENOMETHIONINE | R - 380 |
1k75_A_397 | 1k75 | A | MSESELENOMETHIONINE | T - 406 |
1k75_A_397 | 1k75 | A | MSESELENOMETHIONINE | L - 410 |
1qjb_A_165 | 1qjb | A | SEPPHOSPHOSERINE | L - 172 |
1qjb_A_165 | 1qjb | A | SEPPHOSPHOSERINE | N - 173 |
1qjb_A_165 | 1qjb | A | SEPPHOSPHOSERINE | V - 176 |
3fap_B_112 | 3fap | B | ARDC15-(R)-METHYLTHIENYL RAPAMYCIN | H - 117 |
3fap_B_112 | 3fap | B | ARDC15-(R)-METHYLTHIENYL RAPAMYCIN | L - 120 |
3fap_B_112 | 3fap | B | ARDC15-(R)-METHYLTHIENYL RAPAMYCIN | E - 121 |
3fap_B_112 | 3fap | B | ARDC15-(R)-METHYLTHIENYL RAPAMYCIN | S - 124 |
3fap_B_112 | 3fap | B | ARDC15-(R)-METHYLTHIENYL RAPAMYCIN | R - 125 |
3fap_B_112 | 3fap | B | ARDC15-(R)-METHYLTHIENYL RAPAMYCIN | F - 128 |
3fap_B_112 | 3fap | B | ARDC15-(R)-METHYLTHIENYL RAPAMYCIN | G - 129 |
3fap_B_112 | 3fap | B | ARDC15-(R)-METHYLTHIENYL RAPAMYCIN | E - 130 |
Clusters included in this Subclass |
CLUSTER: HH.3.156 |
CLUSTER: HH.4.142 |
CLUSTER: HH.4.295 |
CLUSTER: HH.5.32 |