Logo
Information on SUBCLASS 2.2.8
Subclass Accession number: 4569
Subclass: 2.2.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 13.6 +/- 15.9
Average RMSD (Å) : 0.567 +/- 0.072

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXXX
(φψ)-conformation: aalpaa
Pattern: xxxxxxxx[degnqr]xxxxxxx[filmvy]
Conservation:0.081-1.000-0.435-0.155-0.418-0.026-0.135-0.9200.988-0.075-0.8600.082-0.8251.757-0.663-0.1832.787
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bpy_A_131bpy   A2339ANFEKNVSQAIHKYNAYHHHHHHTT--HHHHHHHaaaaaaaavbaaaaaaa
1cm7_A_2991cm7   A306322ALLLRYSLDADDAACAIHHHHHHTS--HHHHHHHaaaaaaaalbaaaaaaa
1d8w_A_3651d8w   A367383ELRKLEAPGDYTARLALHHHHHHTTT-HHHHHHHaaaaaaaavxaaaaaaa
1dys_A_151dys   A2440TRQAFLSRGDQTNAAKVHHHHHHTTT-HHHHHHHaaaaaaaavxaaaaaaa
1iwp_G_1011iwp   G108124ADELEHTWHATVNAAFVHHHHHHTS--HHHHHHHaaaaaaaalxaaaaaaa
1iwp_G_511iwp   G5773QAQIAEQMQRHAVARNFHHHHHHTTT-HHHHHHHaaaaaaaavxaaaaaaa
1k75_A_3971k75   A407423IETLAAAERLTAHKNAVHHHHHHHTT-HHHHHHHaaaaaaaalbaaaaaaa
1oy3_D_1301oy3   D130146ALHLACRVRAHTCACVLHHHHHTTTT-HHHHHHHaaaaaaaalxaaaaaaa
1qjb_A_1651qjb   A175191SVFYYEILNSPEKACSLHHHHHHTS--HHHHHHHaaaaaaaalbaaaaaaa
1us7_B_1841us7   B193209WCIDLEVEEKCALMEQVHHHHHHHTT-HHHHHHHaaaaaaaavxaaaaaaa
1utc_A_3341utc   A335351IPYITNVLQNPDLALRMHHHHHHTT--HHHHHHHaaaaaaaavbaaaaaaa
1xaa_*_2881xaa   -295311AMMLEHAFGLVELARKVHHHHHHTT--HHHHHHHaaaaaaaavxaaaaaaa
1xad_*_2881xad   -295311AMMLEHAFGLVELARKVHHHHHHTS--HHHHHHHaaaaaaaavxaaaaaaa
3fap_B_1123fap   B123139ASRLYFGERNVKGMFEVHHHHHHTT--HHHHHHHaaaaaaaalbaaaaaaa
3ygs_P_703ygs   P7490FISCLEDTGQDMLASFLHHHHHHTTT-HHHHHHHaaaaaaaavxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bpy_A_131bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE R - 40
1d8w_A_3651d8w   A     MSESELENOMETHIONINE E - 372
1d8w_A_3651d8w   A     MSESELENOMETHIONINE Y - 377
1d8w_A_3651d8w   A     MSESELENOMETHIONINE R - 380
1k75_A_3971k75   A     MSESELENOMETHIONINE T - 406
1k75_A_3971k75   A     MSESELENOMETHIONINE L - 410
1qjb_A_1651qjb   A     SEPPHOSPHOSERINE L - 172
1qjb_A_1651qjb   A     SEPPHOSPHOSERINE N - 173
1qjb_A_1651qjb   A     SEPPHOSPHOSERINE V - 176
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN H - 117
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN L - 120
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN E - 121
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN S - 124
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN R - 125
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN F - 128
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN G - 129
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN E - 130

Clusters included in this Subclass
CLUSTER: HH.3.156
CLUSTER: HH.4.142
CLUSTER: HH.4.295
CLUSTER: HH.5.32