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Information on SUBCLASS 2.3.2
Subclass Accession number: 4580
Subclass: 2.3.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 30

Average sequence ID (%) : 11.3 +/- 13.8
Average RMSD (Å) : 0.597 +/- 0.237

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXhXXX
(φψ)-conformation: aabpaa
Pattern: x[adegknrt]xxxx[filmy][adegnpst]xxxx
Conservation:-1.1580.340-0.750-0.169-0.639-0.0412.8210.538-0.008-0.270-0.325-0.337
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1elj_A_881elj   A8899EDLLNEFAPMAQHHHHTTB-HHHHaaaaaabxaaaa
1f76_A_31f76   A718RKALFQLDPERAHHHHTTS-HHHHaaaaaaxxaaaa
1fr2_B_651fr2   B6576PELSKNLNPSNKHHHHTTS-HHHHaaaaaabxaaaa
1fx4_A_10551fx4   A10551066HAAYMSLSGEDRHHHHTTS-HHHHaaaaaaxxaaaa
1h1r_B_3441h1r   B344355ADPYLKYLPSVIHHHHTTS-HHHHabwaaabxaaaa
1h3f_A_1371h3f   A141152VRLTSLMTVAQMHHHHTTS-HHHHaaaaaabbaaaa
1hyp_*_251hyp   -2940CALIGGLGDIEAHHHHHTS-HHHHaaaaaaxxaaaa
1hzd_A_1431hzd   A143154LKERAKMSSSEVHHHHTTS-HHHHaaaaaabxaaaa
1j0h_A_3941j0h   A402413MHVLHSYPNNVNHHHHHTS-HHHHaaaaaabxaaaa
1ji1_A_4421ji1   A450461RGTRANYPTNVQHHHHTTS-HHHHaaaaaabxaaaa
1ji2_A_3911ji2   A399410TRARMLYPEQAAHHHHTTS-HHHHaaaaaabxaaaa
1ji7_A_591ji7   A5970GKALLLLTKEDFHHHHTT--HHHHaaaaaaxxaaaa
1jks_A_2381jks   A238249DEYFSNTSALAKHHHHTTS-HHHHaaaaaaxxaaaa
1kas_*_641kas   -6475RKEQRKMDAFIQHHHHTTS-HHHHaaaaaabxaaaa
1kcm_A_2331kcm   A233244LDKWVDLTMDDIHHHHTT--HHHHaaaaaaxbaaaa
1kiy_A_1261kiy   A136147PNVLRHFGPFCSHHHHTTS-HHHHaaaaaabxaaaa
1m1n_A_61m1n   A1425QEVLEVYPEKARHHHHTTS-HHHHaaaaaaxpaaaa
1mz8_B_5071mz8   B507518PELSKQFSRNNNHHHHTTS-HHHHaaaaaabxaaaa
1nf9_A_411nf9   A4152RYFLRPLPESLRHHHHTTS-HHHHaaaaaaxpaaaa
1ogs_A_871ogs   A90101ALNILALSPPAQHHHHTTS-HHHHaaaaaaxxaaaa
1ov9_A_101ov9   A1425RAYARELTIEQLHHHHTTS-HHHHaaaaaabxaaaa
1psw_A_2251psw   A229240NEILAALNTEQQHHHHTTS-HHHHaaaaaabxaaaa
1q52_A_2381q52   A247258AAEINAKSPQAQHHHHTS-HHHHHaaaaaabxaaaa
1qgu_A_31qgu   A1324QEVLEVFPETARHHHHTTS-HHHHaaaaaaxpaaaa
1qo0_A_2361qo0   A236247EAEVAKMESDVAHHHHTTS-HHHHaaaaaaxxaaaa
1rkg_A_4041rkg   A404415PENSMKLTPLVLHHHHTTS-HHHHaaaaaaxbaaaa
1sdo_A_861sdo   A89100IRETLSLEPEEQHHHHTTS-HHHHaaaaaaxxaaaa
1tki_A_2411tki   A241252EEAFKEISIEAMHHHHTTS-HHHHaaaaaaxxaaaa
3gcb_*_213gcb   -2738TTVLKNYNADDAHHHHTTS-HHHHaaaaaabpaaaa
3mbp_*_833mbp   -8394KAFQDKLYPFTWHHHHTTB-HHHHaaaaaabxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f76_A_31f76   A     MSESELENOMETHIONINE Y - 3
1f76_A_31f76   A     OROOROTIC ACID Y - 3
1f76_A_31f76   A     MSESELENOMETHIONINE P - 4
1f76_A_31f76   A     MSESELENOMETHIONINE F - 5
1f76_A_31f76   A     MSESELENOMETHIONINE V - 6
1f76_A_31f76   A     OROOROTIC ACID V - 6
1f76_A_31f76   A     MSESELENOMETHIONINE E - 16
1f76_A_31f76   A     MSESELENOMETHIONINE H - 19
1f76_A_31f76   A     MSESELENOMETHIONINE L - 26
1ji7_A_591ji7   A     MSESELENOMETHIONINE G - 59
1ji7_A_591ji7   A     MSESELENOMETHIONINE A - 61
1ji7_A_591ji7   A     MSESELENOMETHIONINE L - 62
1ji7_A_591ji7   A     MSESELENOMETHIONINE L - 65
1ji7_A_591ji7   A     MSESELENOMETHIONINE R - 73
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL P - 126
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL W - 127
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL W - 128
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL L - 130
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL V - 131
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL N - 132
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL F - 135
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL I - 151
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL T - 154
1kiy_A_1261kiy   A     EDO1,2-ETHANEDIOL L - 155
1nf9_A_411nf9   A     FMTFORMIC ACID Y - 42
1nf9_A_411nf9   A     FMTFORMIC ACID F - 43

Clusters included in this Subclass
CLUSTER: HH.3.180
CLUSTER: HH.3.187
CLUSTER: HH.3.53
CLUSTER: HH.4.348
CLUSTER: HH.4.49
CLUSTER: HH.4.84
CLUSTER: HH.5.117
CLUSTER: HH.5.24
CLUSTER: HH.5.74